Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   M2I92_RS13915 Genome accession   NZ_CP096945
Coordinates   2889836..2890480 (+) Length   214 a.a.
NCBI ID   WP_069382774.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY5525     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2884836..2895480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I92_RS13900 (M2I92_13870) - 2885470..2886684 (+) 1215 WP_003097556.1 MFS transporter -
  M2I92_RS13905 (M2I92_13875) - 2886700..2887728 (-) 1029 WP_003097554.1 AraC family transcriptional regulator -
  M2I92_RS13910 (M2I92_13880) pqsH 2888346..2889494 (+) 1149 WP_034040936.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  M2I92_RS13915 (M2I92_13885) letA 2889836..2890480 (+) 645 WP_069382774.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  M2I92_RS13920 (M2I92_13890) uvrC 2890481..2892307 (+) 1827 WP_034040938.1 excinuclease ABC subunit UvrC -
  M2I92_RS13925 (M2I92_13895) pgsA 2892341..2892901 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M2I92_RS13935 (M2I92_13905) - 2893302..2893525 (-) 224 Protein_2752 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23555.48 Da        Isoelectric Point: 5.6845

>NTDB_id=592290 M2I92_RS13915 WP_069382774.1 2889836..2890480(+) (letA) [Pseudomonas aeruginosa strain NY5525]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYCIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=592290 M2I92_RS13915 WP_069382774.1 2889836..2890480(+) (letA) [Pseudomonas aeruginosa strain NY5525]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACTG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.028

98.598

0.533
  letA Legionella pneumophila strain ERS1305867

54.028

98.598

0.533