Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KZ795_RS16015 Genome accession   NZ_CP080286
Coordinates   3466351..3466986 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain UNC_PaerCF12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3461351..3471986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ795_RS16000 (KZ795_16000) - 3462058..3463302 (+) 1245 WP_033975958.1 lipoprotein-releasing ABC transporter permease subunit -
  KZ795_RS16005 (KZ795_16005) - 3463389..3463922 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  KZ795_RS16010 (KZ795_16010) comA 3464053..3466278 (+) 2226 WP_121348269.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KZ795_RS16015 (KZ795_16015) exbB 3466351..3466986 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KZ795_RS16020 (KZ795_16020) - 3466983..3467423 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  KZ795_RS16025 (KZ795_16025) lpxK 3467423..3468421 (+) 999 WP_121348270.1 tetraacyldisaccharide 4'-kinase -
  KZ795_RS16030 (KZ795_16030) - 3468459..3468644 (+) 186 WP_003091157.1 Trm112 family protein -
  KZ795_RS16035 (KZ795_16035) kdsB 3468644..3469408 (+) 765 WP_121348271.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KZ795_RS16040 (KZ795_16040) - 3469408..3469872 (+) 465 WP_033968891.1 low molecular weight protein-tyrosine-phosphatase -
  KZ795_RS16045 (KZ795_16045) murB 3469869..3470888 (+) 1020 WP_121348272.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=591945 KZ795_RS16015 WP_003091163.1 3466351..3466986(+) (exbB) [Pseudomonas aeruginosa strain UNC_PaerCF12]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=591945 KZ795_RS16015 WP_003091163.1 3466351..3466986(+) (exbB) [Pseudomonas aeruginosa strain UNC_PaerCF12]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGTGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81