Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   KZW86_RS00275 Genome accession   NZ_CP080249
Coordinates   59717..61066 (-) Length   449 a.a.
NCBI ID   WP_011302039.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NV_1     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54717..66066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZW86_RS00245 (KZW86_00250) - 55785..56111 (-) 327 WP_234769200.1 JAB domain-containing protein -
  KZW86_RS00250 (KZW86_00255) - 56104..56310 (-) 207 WP_114604133.1 hypothetical protein -
  KZW86_RS00255 (KZW86_00260) - 56312..56830 (-) 519 WP_153906605.1 DUF1643 domain-containing protein -
  KZW86_RS00260 (KZW86_00265) - 56848..57159 (-) 312 WP_153906606.1 DUF960 family protein -
  KZW86_RS00265 (KZW86_00270) - 57255..57593 (-) 339 WP_011302037.1 SAUGI family uracil-DNA glycosylase inhibitor -
  KZW86_RS00270 (KZW86_00275) ccrB 58068..59696 (-) 1629 WP_011302038.1 recombinase family protein Machinery gene
  KZW86_RS00275 (KZW86_00280) ccrA 59717..61066 (-) 1350 WP_011302039.1 recombinase family protein Machinery gene
  KZW86_RS00280 (KZW86_00285) - 61244..61501 (-) 258 WP_011302040.1 hypothetical protein -
  KZW86_RS00285 (KZW86_00290) - 61566..63314 (-) 1749 WP_228766655.1 DUF927 domain-containing protein -
  KZW86_RS00290 (KZW86_00295) - 63362..63652 (-) 291 WP_113587732.1 DUF1413 domain-containing protein -
  KZW86_RS00295 (KZW86_00300) - 63834..64835 (-) 1002 WP_151130518.1 hypothetical protein -
  KZW86_RS00300 (KZW86_00305) - 65019..65585 (+) 567 WP_031869230.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52434.12 Da        Isoelectric Point: 10.0661

>NTDB_id=591651 KZW86_RS00275 WP_011302039.1 59717..61066(-) (ccrA) [Staphylococcus aureus strain NV_1]
MKQAMGYLRQSTTKQQSLAAQKQTIKVLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQTYHVHILSVRDGYFDMNKAFDRLKLNIFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYH
NGTFTIDTVKSPTVKAVFNYYLQGYGYKKIAQYLEADNKFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKKQKDIEAKNTLTQEQLIEKLAQGKIDAESFRKQTQSSRQHSKPILSINAYQIQKAFQ
NIIQQRFTLNMLYPYIDEIHINKNKTLTGIYFKNEPLNIVNQTTQSTIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=591651 KZW86_RS00275 WP_011302039.1 59717..61066(-) (ccrA) [Staphylococcus aureus strain NV_1]
ATGAAACAAGCAATGGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCAAGGT
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAGGGACAATGTGACGTATTATGTTGCTATCGTCTGAATAGACTTCATCGTAAC
CTAAAAAATGCATTAAAACTCATGAAATTGTGTCAAACGTATCATGTTCATATCTTAAGTGTTCGTGATGGCTACTTCGA
CATGAATAAAGCTTTCGATCGGTTGAAGCTCAATATTTTCATCAGTTTGGCTGAACTCGAATCAGATAATATTGGTGAAC
AAGTCAAAAATGGCCTTCGAGAAAAAGCAAAACAAGGTAAACTGATTACGACTCATGCACCCTTTGGTTATCACTATCAT
AACGGTACTTTCACGATAGACACAGTAAAATCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATAATAAATTCATTAATCGCAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTAAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCCTATTGTCATTCGACACTCACAAACATGACTGTCCGAAAACCAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAACGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATCAACCATACAATTCAACAACGACTCAAAAAACAAAAAGA
CATAGAAGCTAAAAATACACTCACGCAAGAACAACTGATAGAAAAATTAGCACAAGGTAAAATTGATGCAGAATCTTTCA
GAAAACAAACACAATCATCGCGACAACATTCAAAACCTATATTATCAATCAATGCGTATCAAATTCAAAAGGCTTTTCAA
AATATCATTCAACAACGTTTCACGTTAAACATGTTGTACCCTTACATTGATGAAATTCATATTAACAAAAATAAAACACT
TACGGGTATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAACGACGCAATCAACGATTGCTTAA

Domains

Predicted by InterProScan.

Recombinase (Recombinase)

(170-249)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

89.755

100

0.898
  ccrA Staphylococcus aureus N315

75.278

100

0.753