Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ITG12_RS14115 Genome accession   NZ_CP080238
Coordinates   3013994..3014611 (-) Length   205 a.a.
NCBI ID   WP_038870500.1    Uniprot ID   -
Organism   Vibrio sp. ED002     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3008994..3019611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS14105 (ITG12_14025) aceF 3010115..3012028 (+) 1914 WP_038878909.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  ITG12_RS14110 (ITG12_14030) lpdA 3012272..3013702 (+) 1431 WP_038878912.1 dihydrolipoyl dehydrogenase -
  ITG12_RS14115 (ITG12_14035) opaR 3013994..3014611 (-) 618 WP_038870500.1 transcriptional regulator OpaR Regulator
  ITG12_RS14120 (ITG12_14040) hpt 3014932..3015462 (+) 531 WP_038870502.1 hypoxanthine phosphoribosyltransferase -
  ITG12_RS14125 (ITG12_14045) can 3015550..3016221 (-) 672 WP_038870504.1 carbonate dehydratase -
  ITG12_RS14130 (ITG12_14050) - 3016503..3018173 (+) 1671 WP_038870506.1 SulP family inorganic anion transporter -
  ITG12_RS14135 (ITG12_14055) - 3018427..3019344 (+) 918 WP_038879226.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23738.02 Da        Isoelectric Point: 6.2211

>NTDB_id=591589 ITG12_RS14115 WP_038870500.1 3013994..3014611(-) (opaR) [Vibrio sp. ED002]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=591589 ITG12_RS14115 WP_038870500.1 3013994..3014611(-) (opaR) [Vibrio sp. ED002]
ATGGACTCAATAGCTAAGAGACCTCGCACTAGGCTTTCCCCTTTAAAACGTAAACAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGCCGTGGTGGTCACGCAGACATTGCTGAGATTGCACAAGTTTCTGTTGCAACAGTAT
TTAATTACTTCCCAACTCGTGAAGATTTGGTTGATGAAGTACTGAACCACGTTGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATCGACTTAGACCTTCACGCACGTGAAAACATCGCCAACATCACAAACGCAATGATCGAACTTGTTAGCCAAGA
TTGCCACTGGCTAAAAGTATGGTTCGAATGGAGCGCATCAACACGTGATGAAGTATGGCCATTGTTCGTGACAACTAACC
GCACTAACCAACTGTTGGTGCAAAACATGTTCATTAAAGCAATTGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGTTACTCTATTTTCGTTCAAGCAAACCGCTCTAAGAGCGAAGCAGAGCTAAC
GAACCTAGTAAGCGCATATTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

99.512

0.951
  hapR Vibrio cholerae C6706

72.222

96.585

0.698
  hapR Vibrio cholerae strain A1552

72.222

96.585

0.698