Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   KZW87_RS02925 Genome accession   NZ_CP080222
Coordinates   598318..598887 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NT_8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 593318..603887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZW87_RS02900 (KZW87_02890) cysE 594531..595178 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  KZW87_RS02905 (KZW87_02895) cysS 595162..596562 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  KZW87_RS02910 (KZW87_02900) - 596555..596959 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  KZW87_RS02915 (KZW87_02905) rlmB 596967..597713 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KZW87_RS02920 (KZW87_02910) - 597713..598237 (+) 525 WP_000664738.1 NYN domain-containing protein -
  KZW87_RS02925 (KZW87_02915) sigH 598318..598887 (+) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  KZW87_RS02930 (KZW87_02920) rpmG 599002..599145 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  KZW87_RS02935 (KZW87_02925) secE 599201..599383 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  KZW87_RS02940 (KZW87_02930) nusG 599396..599944 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  KZW87_RS02945 (KZW87_02935) rplK 600125..600547 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  KZW87_RS02950 (KZW87_02940) rplA 600755..601447 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  KZW87_RS02955 (KZW87_02945) rplJ 601719..602219 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  KZW87_RS02960 (KZW87_02950) rplL 602262..602630 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  KZW87_RS02965 (KZW87_02955) - 602805..603413 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=591447 KZW87_RS02925 WP_000872876.1 598318..598887(+) (sigH) [Staphylococcus aureus strain NT_8]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=591447 KZW87_RS02925 WP_000872876.1 598318..598887(+) (sigH) [Staphylococcus aureus strain NT_8]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984