Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   MSA_RS06945 Genome accession   NC_021486
Coordinates   1312761..1313987 (-) Length   408 a.a.
NCBI ID   WP_041165764.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307761..1318987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS06920 (MSA_14270) - 1308635..1310011 (-) 1377 WP_016480947.1 amino acid permease -
  MSA_RS06925 (MSA_14280) - 1310141..1310791 (-) 651 WP_016480948.1 HXXEE domain-containing protein -
  MSA_RS11870 (MSA_14290) - 1310949..1311272 (-) 324 WP_001867206.1 HXXEE domain-containing protein -
  MSA_RS11980 (MSA_14300) - 1311324..1311452 (-) 129 WP_000854047.1 hypothetical protein -
  MSA_RS06935 (MSA_14310) - 1311544..1312092 (+) 549 WP_016480949.1 TetR/AcrR family transcriptional regulator -
  MSA_RS06940 (MSA_14320) yihA 1312154..1312750 (-) 597 WP_000796925.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  MSA_RS06945 (MSA_14330) clpX 1312761..1313987 (-) 1227 WP_041165764.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  MSA_RS06955 (MSA_14350) - 1314205..1314699 (-) 495 WP_000166043.1 dihydrofolate reductase -
  MSA_RS06960 (MSA_14360) - 1314779..1315618 (-) 840 WP_000158595.1 thymidylate synthase -
  MSA_RS06965 (MSA_14370) - 1315772..1316944 (+) 1173 WP_079269322.1 hydroxymethylglutaryl-CoA synthase -
  MSA_RS06970 (MSA_14380) - 1316946..1318229 (+) 1284 WP_016480952.1 hydroxymethylglutaryl-CoA reductase, degradative -
  MSA_RS06975 (MSA_14390) - 1318321..1318770 (+) 450 WP_001039194.1 DUF1836 domain-containing protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44848.31 Da        Isoelectric Point: 4.4424

>NTDB_id=59128 MSA_RS06945 WP_041165764.1 1312761..1313987(-) (clpX) [Streptococcus agalactiae ILRI005]
MAGNRNNDMNVYCSFCGKSQDEVKKIIAGNGVFICNECVALSQEIIKEELAEEVLADLAEVPKPKELLEILNQYVVGQDR
AKRALAVAVYNHYKRVSYIESSDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQINTKN
ILFIVGGAFDGIEDLVKQRLGEKVIGFGQTSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALELLTAEDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALLAIADKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEGT
DKPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=59128 MSA_RS06945 WP_041165764.1 1312761..1313987(-) (clpX) [Streptococcus agalactiae ILRI005]
ATGGCTGGGAATCGTAATAACGATATGAATGTCTATTGTTCATTTTGTGGCAAAAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAATGGTGTTTTCATTTGTAATGAATGTGTAGCCTTATCACAAGAAATTATTAAGGAAGAATTAGCTGAGGAAG
TACTTGCTGATTTAGCAGAAGTACCAAAACCTAAGGAACTATTAGAAATATTAAATCAATATGTTGTAGGGCAAGATCGT
GCTAAACGTGCTTTAGCAGTTGCTGTCTACAATCATTACAAGCGTGTTAGTTATATCGAGAGTAGTGATGATGATGTAGA
TTTGCAAAAATCCAACATTTTGATGATTGGTCCAACTGGCTCAGGAAAAACCTTCTTAGCACAAACACTAGCTAAAAGCC
TTAATGTACCGTTTGCTATTGCAGATGCGACTTCATTGACCGAAGCAGGATACGTTGGAGAAGATGTTGAGAATATTCTT
CTTAAATTGATTCAAGCTGCTGATTATAATGTCGAACGTGCTGAGCGTGGTATTATCTACGTTGATGAAATAGATAAAAT
TGCTAAGAAAGGCGAAAATGTTTCTATCACACGTGATGTATCTGGTGAAGGTGTGCAGCAAGCCCTTCTTAAAATTATTG
AGGGTACGGTAGCAAGTGTTCCCCCACAGGGTGGGCGTAAACATCCTAACCAAGAAATGATTCAAATTAATACCAAGAAC
ATCCTTTTTATTGTCGGTGGTGCTTTTGATGGTATTGAAGACCTTGTGAAGCAACGTTTAGGCGAAAAAGTTATTGGTTT
TGGACAGACAAGTCGTAAAATTGATGACAACGCTTCTTATATGCAAGAGATAATTTCTGAGGATATTCAAAAGTTTGGAC
TGATCCCAGAGTTTATTGGCCGTTTACCAGTAGTTGCAGCGTTAGAACTTCTTACTGCAGAAGATCTGGTTCGTATTCTG
ACAGAACCACGCAATGCTTTGGTTAAACAATACCAAACCTTATTATCTTATGATGGTGTAGAATTGGAATTTGACCAGGA
TGCTCTATTGGCTATCGCTGATAAGGCTATCGAGCGCAAGACTGGTGCACGTGGTTTACGTTCTATTATTGAAGAAACGA
TGCTTGATATCATGTTTGAAATTCCAAGCCAAGAAGATGTAACAAAAGTTCGTATCACAAAGGCTGCTGTTGAGGGTACT
GACAAGCCTGTTTTAGAGACGGCTTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

90.22

100

0.904
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.25

98.039

0.571

Multiple sequence alignment