Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MUK60_RS23090 Genome accession   NZ_CP096907
Coordinates   5284232..5284831 (+) Length   199 a.a.
NCBI ID   WP_189773119.1    Uniprot ID   A0ABZ1JI83
Organism   Streptomyces sp. LRE541     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5279232..5289831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUK60_RS23070 (MUK60_23070) - 5279574..5281106 (+) 1533 WP_248778537.1 substrate-binding domain-containing protein -
  MUK60_RS23075 (MUK60_23075) - 5281172..5282590 (+) 1419 WP_248778538.1 M20/M25/M40 family metallo-hydrolase -
  MUK60_RS23080 (MUK60_23080) - 5282735..5283472 (-) 738 WP_248778539.1 SLATT domain-containing protein -
  MUK60_RS23085 (MUK60_23085) - 5283765..5284109 (+) 345 WP_248778540.1 YbaB/EbfC family nucleoid-associated protein -
  MUK60_RS23090 (MUK60_23090) recR 5284232..5284831 (+) 600 WP_189773119.1 recombination mediator RecR Machinery gene
  MUK60_RS23095 (MUK60_23095) - 5284879..5285538 (+) 660 WP_107018121.1 DUF5063 domain-containing protein -
  MUK60_RS23100 (MUK60_23100) - 5285888..5287162 (+) 1275 WP_248778541.1 aspartate kinase -
  MUK60_RS23105 (MUK60_23105) - 5287197..5288252 (+) 1056 WP_283108469.1 aspartate-semialdehyde dehydrogenase -
  MUK60_RS23110 (MUK60_23110) - 5288658..5289326 (+) 669 WP_189773125.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21810.23 Da        Isoelectric Point: 4.9908

>NTDB_id=591206 MUK60_RS23090 WP_189773119.1 5284232..5284831(+) (recR) [Streptomyces sp. LRE541]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=591206 MUK60_RS23090 WP_189773119.1 5284232..5284831(+) (recR) [Streptomyces sp. LRE541]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGACTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAGCCGACGGACGTACGCCGTCTCGCGCAGTGCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCCACCTGCGGCAACGTGGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTCTCGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTGGTCGCGGTCGAGCGGACCCGCGAGTTCCGGGGCAAGTACCACGTGCTCGG
CGGCGCGATCAGCCCCATCGAGGGCGTGGGCCCGGACGACCTGCGTATAAGGGAGCTGCTGGCGCGGCTCGCCGACGGCG
CGGTCACGGAGCTGATCCTGGCCACCGACCCGAACCTGGAGGGCGAGGCCACGGCCACGTATCTCGCCCGCATGATCAAA
CCCATGGGTCTGCGGGTCACCCGCCTCGCCAGCGGGCTGCCCGTGGGCGGCGACCTGGAGTACGCCGACGAGGTCACCCT
GGGACGCGCCTTCGAGGGAAGGCGGCTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452