Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   M1Y13_RS09915 Genome accession   NZ_CP096902
Coordinates   2038570..2039226 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain RSHH22     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2033570..2044226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1Y13_RS09885 (M1Y13_09890) dcyD 2034450..2035436 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  M1Y13_RS09890 (M1Y13_09895) tcyL 2035451..2036119 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  M1Y13_RS09895 (M1Y13_09900) tcyN 2036116..2036868 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  M1Y13_RS09900 (M1Y13_09905) sdiA 2037098..2037820 (+) 723 WP_129541935.1 transcriptional regulator SdiA -
  M1Y13_RS09905 (M1Y13_09910) yecF 2037887..2038111 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  M1Y13_RS09910 (M1Y13_09915) yecU 2038098..2038274 (-) 177 WP_000590347.1 protein YecU -
  M1Y13_RS25960 - 2038357..2038428 (-) 72 Protein_1941 transcriptional regulator -
  M1Y13_RS09915 (M1Y13_09920) letA 2038570..2039226 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  M1Y13_RS09920 (M1Y13_09925) uvrC 2039223..2041055 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  M1Y13_RS09925 (M1Y13_09930) pgsA 2041112..2041660 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M1Y13_RS09945 (M1Y13_09950) - 2042655..2042936 (+) 282 WP_071529678.1 hypothetical protein -
  M1Y13_RS09950 (M1Y13_09955) - 2043126..2043266 (-) 141 WP_000078920.1 Hok/Gef family protein -
  M1Y13_RS09955 (M1Y13_09960) - 2043456..2043716 (-) 261 WP_000488107.1 ogr/Delta-like zinc finger family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=591111 M1Y13_RS09915 WP_000611335.1 2038570..2039226(+) (letA) [Escherichia coli strain RSHH22]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=591111 M1Y13_RS09915 WP_000611335.1 2038570..2039226(+) (letA) [Escherichia coli strain RSHH22]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTTGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486