Detailed information NTG0591094

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KZR01_RS28905
• Genome accession: NZ_CP080098
• Coordinates: 3848845..3849714 (+)
• Length: 289 a.a.
• NCBI ID: WP_061065379.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3843845..3854714

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KZR01_RS28880	nadC	3844210..3845097 (+)	888	WP_061065376.1	carboxylating nicotinate-nucleotide diphosphorylase	-
KZR01_RS28890	-	3845362..3845826 (+)	465	Protein_3584	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
KZR01_RS28895	pilB	3845830..3847515 (+)	1686	WP_061065378.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KZR01_RS28900	pilC	3847549..3848772 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
KZR01_RS28905	pilD	3848845..3849714 (+)	870	WP_061065379.1	A24 family peptidase	Machinery gene
KZR01_RS28910	coaE	3849715..3850329 (+)	615	WP_061065380.1	dephospho-CoA kinase	-
KZR01_RS28915	zapD	3850357..3851097 (+)	741	WP_005446251.1	cell division protein ZapD	-
KZR01_RS28920	yacG	3851160..3851354 (+)	195	WP_005446249.1	DNA gyrase inhibitor YacG	-
KZR01_RS28925	rplS	3851921..3852274 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
KZR01_RS28930	trmD	3852316..3853059 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
KZR01_RS28935	rimM	3853087..3853635 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
KZR01_RS28940	rpsP	3853664..3853912 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32562.73 Da
• Isoelectric Point: 7.5715

>NTDB_id=591094 KZR01_RS28905 WP_061065379.1 3848845..3849714(+) (pilD) [Vibrio harveyi strain]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLVLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=591094 KZR01_RS28905 WP_061065379.1 3848845..3849714(+) (pilD) [Vibrio harveyi strain]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTAGTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCAGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAGCTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.54	100	0.965
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	53.137	93.772	0.498
pilD	Acinetobacter nosocomialis M2	52.768	93.772	0.495
pilD	Neisseria gonorrhoeae MS11	45.29	95.502	0.433