Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   KZR01_RS28850 Genome accession   NZ_CP080098
Coordinates   3835133..3835747 (+) Length   204 a.a.
NCBI ID   WP_005446268.1    Uniprot ID   A0A9X3MGU4
Organism   Vibrio harveyi strain     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3830133..3840747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZR01_RS28830 - 3830419..3831336 (-) 918 WP_061065902.1 ABC transporter ATP-binding protein -
  KZR01_RS28835 - 3831570..3833240 (-) 1671 WP_009698752.1 SulP family inorganic anion transporter -
  KZR01_RS28840 can 3833524..3834192 (+) 669 WP_005446273.1 carbonate dehydratase -
  KZR01_RS28845 hpt 3834281..3834811 (-) 531 WP_005446271.1 hypoxanthine phosphoribosyltransferase -
  KZR01_RS28850 opaR 3835133..3835747 (+) 615 WP_005446268.1 transcriptional regulator OpaR Regulator
  KZR01_RS28855 lpdA 3836069..3837499 (-) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  KZR01_RS28860 aceF 3837743..3839644 (-) 1902 WP_009703492.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23559.82 Da        Isoelectric Point: 6.0756

>NTDB_id=591091 KZR01_RS28850 WP_005446268.1 3835133..3835747(+) (opaR) [Vibrio harveyi strain]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=591091 KZR01_RS28850 WP_005446268.1 3835133..3835747(+) (opaR) [Vibrio harveyi strain]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCTGATATTGCAGAGATTGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCAACTCGCGAAGACTTGGTGGATGAAGTTCTGAATCACGTGGTTCGTCAATTCTCGAACTTCTTATCA
GATAACATCGACTTAGACATTCATGCACGCGAGAACATCGCTAACATCACTAACGCAATGATTGAACTAGTAAGCCAAGA
TTGCCATTGGTTGAAAGTTTGGTTCGAGTGGAGTGCATCAACACGTGATGAAGTGTGGCCACTATTCGTAACGACAAACC
GCACCAACCAACTGCTGGTGCAAAACATGTTCATCAAAGCTATCGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCATGGTATTTGTTACTCTATCTTCGTACAAGCAAATCGCTCTAAGAGCGAAGCCGAGCTATC
AACACTCGTTAGTGCTTACCTAGATATGTTGTGCATCTACAACCGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

100

0.956
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696