Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MYF74_RS05795 Genome accession   NZ_CP096837
Coordinates   1209347..1210084 (-) Length   245 a.a.
NCBI ID   WP_033555457.1    Uniprot ID   -
Organism   Escherichia coli strain PS10-3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204347..1215084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYF74_RS05765 (MYF74_05765) yfiL 1204505..1204870 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  MYF74_RS05770 (MYF74_05770) aroF 1205080..1206150 (+) 1071 WP_248748180.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  MYF74_RS05775 (MYF74_05775) tyrA 1206161..1207282 (+) 1122 WP_000225231.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MYF74_RS05780 (MYF74_05780) pheA 1207325..1208485 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  MYF74_RS05785 (MYF74_05785) pheL 1208584..1208631 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MYF74_RS05790 (MYF74_05790) raiA 1208735..1209076 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MYF74_RS05795 (MYF74_05795) comL 1209347..1210084 (-) 738 WP_033555457.1 outer membrane protein assembly factor BamD Machinery gene
  MYF74_RS05800 (MYF74_05800) rluD 1210219..1211199 (+) 981 WP_000079090.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MYF74_RS05805 (MYF74_05805) yfiH 1211196..1211927 (+) 732 WP_000040150.1 purine nucleoside phosphorylase YfiH -
  MYF74_RS05810 (MYF74_05810) clpC 1212057..1214630 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27859.42 Da        Isoelectric Point: 6.4874

>NTDB_id=590945 MYF74_RS05795 WP_033555457.1 1209347..1210084(-) (comL) [Escherichia coli strain PS10-3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNTQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=590945 MYF74_RS05795 WP_033555457.1 1209347..1210084(-) (comL) [Escherichia coli strain PS10-3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTAGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATACGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376