Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KYI09_RS06265 Genome accession   NZ_CP079965
Coordinates   1235353..1235634 (-) Length   93 a.a.
NCBI ID   WP_099483031.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain 19Msa0687     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230353..1240634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYI09_RS06235 (KYI09_06240) gcvPA 1231063..1232406 (-) 1344 WP_133445021.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KYI09_RS06240 (KYI09_06245) gcvT 1232419..1233504 (-) 1086 WP_219522381.1 glycine cleavage system aminomethyltransferase GcvT -
  KYI09_RS06245 (KYI09_06250) - 1233642..1234148 (-) 507 WP_219520731.1 shikimate kinase -
  KYI09_RS06250 (KYI09_06255) comGF 1234309..1234761 (-) 453 WP_219520733.1 competence type IV pilus minor pilin ComGF -
  KYI09_RS06255 (KYI09_06260) - 1234706..1234948 (-) 243 WP_144781684.1 hypothetical protein -
  KYI09_RS06260 (KYI09_06265) - 1234935..1235360 (-) 426 WP_219520735.1 type II secretion system protein -
  KYI09_RS06265 (KYI09_06270) comGC 1235353..1235634 (-) 282 WP_099483031.1 competence type IV pilus major pilin ComGC Machinery gene
  KYI09_RS06270 (KYI09_06275) - 1235887..1236144 (+) 258 WP_219520737.1 hypothetical protein -
  KYI09_RS06275 (KYI09_06280) - 1236119..1236550 (+) 432 WP_219520739.1 YolD-like family protein -
  KYI09_RS06280 (KYI09_06285) - 1236817..1237497 (+) 681 WP_219520741.1 hypothetical protein -
  KYI09_RS06285 (KYI09_06290) - 1237533..1238390 (-) 858 WP_219520744.1 hypothetical protein -
  KYI09_RS06290 (KYI09_06295) - 1238488..1239393 (-) 906 WP_219520746.1 N-acetylmuramoyl-L-alanine amidase -
  KYI09_RS06295 (KYI09_06300) - 1239396..1239662 (-) 267 WP_219520748.1 phage holin -
  KYI09_RS06300 (KYI09_06305) - 1239710..1240096 (-) 387 WP_099483020.1 hypothetical protein -
  KYI09_RS06305 (KYI09_06310) - 1240083..1240544 (-) 462 WP_101035992.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10137.04 Da        Isoelectric Point: 5.0178

>NTDB_id=590546 KYI09_RS06265 WP_099483031.1 1235353..1235634(-) (comGC) [Macrococcoides caseolyticum strain 19Msa0687]
MTLIEMLLVLLVISILIIVIIPNIAKQSKTVQAKGCEAQVKMVQGQIEAYRIDTGKTPSTVNELVPEYLKENQVKCKDGT
DIIINNGEALLGA

Nucleotide


Download         Length: 282 bp        

>NTDB_id=590546 KYI09_RS06265 WP_099483031.1 1235353..1235634(-) (comGC) [Macrococcoides caseolyticum strain 19Msa0687]
ATGACTTTAATTGAAATGTTATTAGTATTGCTCGTAATTTCGATTTTAATTATCGTCATTATTCCAAATATCGCTAAACA
ATCTAAGACTGTACAAGCTAAAGGATGCGAAGCTCAGGTAAAGATGGTACAAGGTCAGATCGAAGCCTATCGAATCGATA
CTGGTAAAACACCGTCTACAGTAAATGAGCTTGTTCCTGAATATTTGAAAGAAAATCAAGTGAAATGTAAAGATGGAACA
GACATAATAATCAATAATGGCGAGGCATTATTAGGTGCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

56.044

97.849

0.548
  comGC Staphylococcus aureus N315

56.044

97.849

0.548
  comGC Bacillus subtilis subsp. subtilis str. 168

44.944

95.699

0.43