Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FGCSD_RS08645 Genome accession   NZ_AP018726
Coordinates   1737484..1738125 (-) Length   213 a.a.
NCBI ID   WP_129556122.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1732484..1743125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS08625 (FGCSD_1677) - 1733858..1734499 (+) 642 WP_129556118.1 YigZ family protein -
  FGCSD_RS08630 (FGCSD_1678) cysK 1734600..1735535 (+) 936 WP_129556119.1 cysteine synthase A -
  FGCSD_RS08635 (FGCSD_1679) - 1735688..1736047 (-) 360 WP_129556120.1 S1 RNA-binding domain-containing protein -
  FGCSD_RS08640 (FGCSD_1680) - 1736047..1737447 (-) 1401 WP_129556121.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FGCSD_RS08645 (FGCSD_1681) vraR 1737484..1738125 (-) 642 WP_129556122.1 response regulator transcription factor Regulator
  FGCSD_RS08650 (FGCSD_1682) - 1738118..1739122 (-) 1005 WP_129556123.1 sensor histidine kinase -
  FGCSD_RS08655 (FGCSD_1683) liaF 1739119..1739811 (-) 693 WP_129556124.1 cell wall-active antibiotics response protein LiaF -
  FGCSD_RS08660 (FGCSD_1684) pknB 1739938..1741833 (-) 1896 WP_003052158.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  FGCSD_RS08665 (FGCSD_1685) - 1741830..1742570 (-) 741 WP_003061786.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23753.34 Da        Isoelectric Point: 4.7079

>NTDB_id=59045 FGCSD_RS08645 WP_129556122.1 1737484..1738125(-) (vraR) [Streptococcus dysgalactiae strain Kdys0611]
MSNIRVILVDDHEMVRMGLKSFLNLQPDIDVIGEASNGREGVELALALKPDVLVMDLVMPELGGVEATLEILDKWKDAKV
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTACEYDILHLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=59045 FGCSD_RS08645 WP_129556122.1 1737484..1738125(-) (vraR) [Streptococcus dysgalactiae strain Kdys0611]
ATGAGTAACATAAGAGTGATACTAGTGGATGATCATGAAATGGTCCGTATGGGACTTAAAAGTTTTTTGAATTTACAACC
AGATATCGACGTTATTGGCGAAGCTTCTAATGGACGTGAGGGAGTTGAGTTGGCCTTAGCCTTAAAACCAGATGTACTGG
TTATGGATTTGGTGATGCCAGAATTAGGTGGTGTTGAGGCGACCTTGGAAATCCTCGATAAGTGGAAAGATGCCAAAGTA
TTGGTCTTGACTTCTTATTTGGACAATGAGAAAATTTACCCTGTCATTGATGCTGGTGCTAAAGGTTACATGTTAAAGAC
TTCTAGTGCAGCCGAAATTCTAAATGCTATTCGGAAAGTTTCAAAAGGTGAATTGGCCATTGAAACAGAGGTAGACAAAA
AAATTAAAGCGCATGATCAACACCCTGATTTGCATGAAGAGCTAACCGCGTGCGAGTATGATATTCTACATCTTTTAGCT
AAAGGGTATGATAATCAAACTATAGCGGATGAACTTTTCATCTCCTTGAAAACCGTTAAAACGCATGTATCTAATATTCT
TGCTAAACTAGAAGTTGATGACCGAACTCAAGCTGTTGTATACGCTTTCCGACACCATTTAGTCCCCCAAGATGATAATT
AG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.208

97.183

0.498
  degU Bacillus subtilis subsp. subtilis str. 168

34.956

100

0.371

Multiple sequence alignment