Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KZH42_RS04320 Genome accession   NZ_CP079941
Coordinates   868223..869026 (-) Length   267 a.a.
NCBI ID   WP_002244053.1    Uniprot ID   Q9K0B1
Organism   Neisseria meningitidis strain C311     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 863223..874026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH42_RS11965 - 865503..865694 (-) 192 Protein_832 hypothetical protein -
  KZH42_RS04315 (KZH42_04315) comA 865776..867995 (+) 2220 WP_153063205.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KZH42_RS04320 (KZH42_04320) comL 868223..869026 (-) 804 WP_002244053.1 outer membrane protein assembly factor BamD Machinery gene
  KZH42_RS04325 (KZH42_04325) rluD 869025..870149 (+) 1125 WP_002247551.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KZH42_RS04330 (KZH42_04330) - 870302..871249 (-) 948 WP_002244055.1 bile acid:sodium symporter family protein -
  KZH42_RS11970 - 871469..871642 (-) 174 Protein_837 IS5/IS1182 family transposase -
  KZH42_RS04335 (KZH42_04335) pgeF 871809..872588 (+) 780 WP_002244057.1 peptidoglycan editing factor PgeF -
  KZH42_RS04340 (KZH42_04340) lptE 872640..873119 (+) 480 WP_002217671.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30915.00 Da        Isoelectric Point: 9.3369

>NTDB_id=590368 KZH42_RS04320 WP_002244053.1 868223..869026(-) (comL) [Neisseria meningitidis strain C311]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHAQQSQLDTAY
AYYKDDEKDKALAAIDRFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYKKLDKPRLAADTRRV
LETNFPKSPFLKQPWRSDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=590368 KZH42_RS04320 WP_002244053.1 868223..869026(-) (comL) [Neisseria meningitidis strain C311]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTAGATAAAGATGC
CCAGATTACCCAAGACTGGAGTGTGGAAAAACTCTATGCCGAAGCCCAGGACGAGCTGAACAGCAGCAATTATACGCGAG
CTGTCAAATTATACGAAATCTTGGAATCGCGCTTCCCTACCAGCCGCCATGCCCAGCAATCCCAACTGGATACGGCATAC
GCCTACTATAAAGATGATGAGAAGGATAAGGCGCTGGCCGCCATTGACCGCTTCCGCCGCCTTCACCCTCAACACCCGAA
TATGGACTACGCGCTATACCTGCGCGGTTTGGTACTGTTCAACGAAGATCAATCTTTCTTGAACAAGCTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTATCAGGCCTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTAGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCGGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTCTTAAAGCAGCCGTGGCGATCTGACGATATGCCCTGGTGGCGTTACTGGCA
CTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9K0B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

100

100

1
  comL Neisseria gonorrhoeae MS11

96.255

100

0.963