Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   KZH42_RS02165 Genome accession   NZ_CP079941
Coordinates   414267..414965 (+) Length   232 a.a.
NCBI ID   WP_002224844.1    Uniprot ID   Q9K189
Organism   Neisseria meningitidis strain C311     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409267..419965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH42_RS02150 (KZH42_02150) trpC 410590..411372 (-) 783 WP_002221930.1 indole-3-glycerol phosphate synthase TrpC -
  KZH42_RS02155 (KZH42_02155) - 411423..412379 (-) 957 WP_002224842.1 YheT family hydrolase -
  KZH42_RS11735 - 412376..412507 (-) 132 WP_255304562.1 hypothetical protein -
  KZH42_RS02160 (KZH42_02160) murJ 412511..414049 (-) 1539 WP_002224843.1 murein biosynthesis integral membrane protein MurJ -
  KZH42_RS02165 (KZH42_02165) dsbA1 414267..414965 (+) 699 WP_002224844.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KZH42_RS02170 (KZH42_02170) amgK 415022..416026 (-) 1005 WP_002224845.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  KZH42_RS02175 (KZH42_02175) - 416096..418504 (+) 2409 WP_002243965.1 LPS-assembly protein LptD -
  KZH42_RS02180 (KZH42_02180) - 418609..419652 (+) 1044 WP_050887586.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25249.83 Da        Isoelectric Point: 5.6277

>NTDB_id=590357 KZH42_RS02165 WP_002224844.1 414267..414965(+) (dsbA1) [Neisseria meningitidis strain C311]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=590357 KZH42_RS02165 WP_002224844.1 414267..414965(+) (dsbA1) [Neisseria meningitidis strain C311]
ATGAAATCCAGACACCTTGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGTAAATATAAAGTTGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3A3T
  PDB 3DVW
  PDB 3HZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

100

100

1
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621