Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   FGCSD_RS06650 Genome accession   NZ_AP018726
Coordinates   1326777..1330001 (-) Length   1074 a.a.
NCBI ID   WP_129555863.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1321777..1335001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS06640 (FGCSD_1264) - 1321872..1322987 (-) 1116 WP_129555861.1 aminotransferase -
  FGCSD_RS06645 (FGCSD_1265) rexA 1323148..1326777 (-) 3630 WP_281429798.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FGCSD_RS06650 (FGCSD_1266) rexB 1326777..1330001 (-) 3225 WP_129555863.1 ATP-dependent nuclease subunit B Machinery gene
  FGCSD_RS06655 (FGCSD_1267) - 1330176..1331102 (+) 927 WP_022554458.1 neutral zinc metallopeptidase -
  FGCSD_RS06660 (FGCSD_1268) - 1331198..1331866 (-) 669 WP_129555864.1 ABC transporter ATP-binding protein -
  FGCSD_RS06665 (FGCSD_1269) - 1331876..1332952 (-) 1077 WP_129555865.1 ABC transporter permease -
  FGCSD_RS06670 (FGCSD_1270) - 1333025..1333411 (-) 387 WP_129555866.1 DUF1722 domain-containing protein -
  FGCSD_RS06675 (FGCSD_1271) - 1333404..1333781 (-) 378 WP_129555867.1 OsmC family protein -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 123533.52 Da        Isoelectric Point: 5.2467

>NTDB_id=59034 FGCSD_RS06650 WP_129555863.1 1326777..1330001(-) (rexB) [Streptococcus dysgalactiae strain Kdys0611]
MKLIYTEMTYSMTDILVAEARQAASRGYRVFYLAPNSLSFEKEREVLTLLPERGSFSITVTRFAQMARYFTFSNSESKQA
LDETALAMIFYRVLMQLTPEDLPVYGRLKDDPAFIKQLIDLYQELKTANLSVYELTQLDTPGKQEDLIRIISLAEELMTQ
QDYHQDSALRSFAKTIETGQLDEQLSKTVLVIDGFSRFSAEEDYLLSLLNSKCQEIVIGSYISQKAYQKPFIKGNIYEAS
IQFLQGLAEQYKTKPIYSQSEKVFAPSFSRVTQLFEANHDFSQVDWQLEEKDKEDIYLWQSHQQKEEIEHVAKAIREKLY
EGYRYKDILVLLGDVDAYQLQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSQRYNWRREDILNMIKSGLFGRFAD
SDVDRFEEYLQFADIKGFTKFSKPFTINSSRHHPLELLNEVREAIFSPLQALFKSQKQLGTSLLDKLMTFFKDVQLAENM
KSLGQNELEIEKNEEVWKTFTDVLTSFYQIFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQPHSKPFV
YAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSKKNHQTALSLLNAATQELVLSVPAVVNEFSDDLS
PYLKELMSFGLPLIDKGSNRFSYAASDIGNYKALLSRLVDLNREAIVADMTEQDKTFWTVALRYLRRQLRHQQVTLPMLD
DHLVTKPLASEVIEARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMTDHTAAS
FDSKLAQAIHQTNQEKEFQYIYQDCAEDRFSLDLLEDIAKSTASILRLNQNMTVSRQEEPFALQVTDQVVVHGIIDRIDQ
LSDGSLGIVDYKSSANQFDIGKFYNGLSPQLVTYLAALQQQFGADDLGHLFGAMYLHLQEPKLDLASFKALDDKLVESIY
KELTYKGIFLESEKEYLANGAYQTRNALYSTEELQTLLTYNALLYKKAAEQIKKGHFVINPYTSDGKSVQGEQLKAITRF
EADLDLGQARHLVTLPAKDKRQQFLTLMRKEDNL

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=59034 FGCSD_RS06650 WP_129555863.1 1326777..1330001(-) (rexB) [Streptococcus dysgalactiae strain Kdys0611]
ATGAAACTAATTTATACAGAAATGACCTATTCAATGACAGACATTTTGGTGGCTGAGGCAAGGCAGGCTGCCTCTCGAGG
TTATCGTGTCTTTTACCTTGCTCCAAACTCTCTCTCGTTTGAAAAGGAAAGAGAAGTATTGACCTTGCTACCAGAACGAG
GGTCCTTCTCCATTACCGTGACGCGTTTTGCTCAGATGGCAAGGTATTTTACATTCTCTAACTCTGAGTCAAAACAAGCC
TTAGACGAGACAGCCTTAGCAATGATTTTTTACCGCGTCTTAATGCAGTTAACCCCTGAAGATCTTCCTGTTTATGGTCG
CTTGAAAGACGATCCGGCTTTTATTAAGCAGCTAATTGATCTCTATCAAGAATTAAAAACGGCTAACCTTAGTGTCTATG
AGTTAACCCAGTTAGATACTCCCGGTAAACAAGAAGACCTAATAAGGATTATCTCCCTTGCCGAAGAACTCATGACTCAG
CAAGATTACCATCAAGACAGTGCTTTGAGGTCCTTTGCTAAAACCATTGAAACAGGTCAATTGGACGAACAACTGTCAAA
AACAGTGCTAGTTATTGATGGGTTTTCTCGTTTTTCTGCTGAAGAAGATTACCTATTATCTCTTCTTAACAGCAAGTGTC
AAGAGATTGTGATAGGAAGTTATATTAGTCAGAAAGCCTACCAAAAACCGTTTATTAAAGGGAATATTTATGAGGCTAGT
ATCCAATTTTTGCAAGGGCTTGCTGAACAGTACAAGACAAAACCGATTTATTCTCAATCGGAAAAGGTTTTCGCGCCGTC
TTTTTCAAGAGTGACTCAGTTATTTGAAGCTAACCATGATTTTTCTCAAGTAGATTGGCAATTGGAAGAAAAAGATAAAG
AAGACATTTACCTCTGGCAAAGCCATCAGCAAAAAGAAGAGATAGAGCATGTTGCTAAGGCTATTCGAGAAAAATTGTAT
GAAGGTTATCGCTATAAGGACATATTGGTCTTGCTAGGAGATGTGGACGCTTACCAGTTGCAAATTGGTCCCATTTTTGA
CAAATTTGAGATTCCTTACTATTTAGGGAAGGCAGAACCCATGACCGCTCATCCCTTAGTGCAATTTATAGAATCTTTAG
AGCGGAGCCAGCGCTATAATTGGCGTCGTGAAGATATTTTAAACATGATCAAATCAGGACTTTTTGGAAGGTTTGCCGAT
AGTGACGTTGACCGCTTTGAAGAATACCTCCAATTTGCAGACATTAAAGGATTTACTAAATTTTCAAAGCCTTTTACGAT
TAATTCCTCTCGTCATCACCCATTGGAGTTGTTAAACGAAGTAAGAGAGGCTATTTTTTCTCCATTGCAAGCCTTATTTA
AGAGTCAAAAACAATTGGGAACGTCATTGCTAGATAAATTGATGACCTTTTTTAAAGACGTTCAGTTAGCAGAAAATATG
AAAAGCCTGGGCCAAAATGAGCTAGAAATAGAGAAAAATGAGGAAGTTTGGAAAACATTTACCGACGTGTTAACCTCTTT
TTACCAGATTTTTGGTCAGGAAAAATTGAAACTGGCGGACTGTCTTTCCTTAATCAAAATGGGAATGCAGTCAGCCCACT
ATCGTATTGTTCCAGCTACTTTAGATGTTGTTTCTATCAAATCCTATGATTTGGTGCAACCTCATTCAAAACCTTTTGTT
TATGCTATTGGTCTTACGCAATCTCATTTTCCCAAGCAAGTCAAAGAGACAGGGCTACTTTCTGATCAAGAACGGGCAAG
AATTAACGAAATCACTGATAGCTTCCAGCATTTTGATATTGGCAGTATCGAAAATAGCAAGAAAAATCATCAGACAGCTC
TTTCACTTTTAAATGCAGCCACTCAAGAATTGGTCCTAAGTGTTCCGGCGGTAGTGAACGAATTTTCAGATGACTTGTCG
CCTTACCTCAAGGAATTGATGTCCTTCGGTCTGCCACTGATTGATAAAGGAAGCAATCGCTTTTCTTACGCTGCTAGTGA
TATTGGCAACTATAAGGCCCTTTTGTCACGTTTAGTTGACCTTAATCGAGAAGCTATAGTGGCTGACATGACCGAACAGG
ACAAGACTTTTTGGACTGTTGCCCTTCGTTATCTCCGACGACAATTAAGACATCAGCAAGTCACACTTCCTATGCTAGAT
GACCATTTGGTGACGAAACCTCTAGCCTCCGAGGTTATTGAGGCACGTTTTCCAAGCGATCGTCCGCTTAGACTATCATC
GACTGCTCTGACTGTTTTTTATAATAACCAGTACAAGTATTTTTTGCAGTATGTCCTAGGCCTACAAGAAGCCGAATCCA
TTCATCCTGATGCCCGTATTCATGGGCAATATTTACATCGGGTATTTGAATTGGTGATGACGGATCACACAGCAGCTTCC
TTTGACAGCAAATTGGCGCAAGCCATTCATCAAACTAACCAAGAAAAAGAGTTTCAATATATCTATCAAGACTGTGCTGA
AGATCGTTTCAGTTTAGACTTGCTTGAAGATATTGCTAAGTCAACCGCTTCTATTTTGCGTCTTAATCAGAATATGACGG
TCAGTCGACAAGAAGAACCTTTTGCCCTGCAGGTAACAGATCAGGTAGTGGTGCATGGGATAATTGATAGGATTGACCAG
TTAAGTGATGGGAGTCTAGGGATTGTTGATTATAAATCCAGTGCGAATCAGTTTGATATCGGGAAGTTTTACAATGGGTT
AAGCCCACAACTTGTTACTTATCTGGCTGCTTTGCAGCAACAATTTGGAGCAGATGATTTAGGGCACTTATTTGGTGCCA
TGTACTTGCATTTGCAAGAGCCTAAGTTGGACTTAGCATCTTTCAAAGCACTTGATGATAAACTGGTTGAAAGTATTTAT
AAAGAATTGACCTATAAAGGAATCTTTTTAGAGTCTGAAAAAGAATATTTAGCAAATGGTGCTTACCAGACGCGAAATGC
ACTTTATTCCACTGAAGAGTTACAAACACTCTTGACTTATAATGCTCTTCTTTACAAGAAAGCAGCAGAGCAGATTAAGA
AAGGGCATTTTGTCATTAACCCTTATACAAGTGATGGGAAGTCTGTTCAAGGAGAACAACTCAAGGCTATTACACGTTTT
GAGGCTGATCTTGATTTGGGCCAAGCAAGGCATCTTGTAACGCTCCCTGCCAAAGATAAGCGCCAGCAGTTTTTAACGTT
AATGAGAAAGGAGGATAACCTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

42.427

100

0.433

Multiple sequence alignment