Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   FGCSD_RS06645 Genome accession   NZ_AP018726
Coordinates   1323148..1326777 (-) Length   1209 a.a.
NCBI ID   WP_281429798.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1318148..1331777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS06620 (FGCSD_1260) - 1318907..1319470 (-) 564 WP_003050197.1 helix-turn-helix domain-containing protein -
  FGCSD_RS06625 (FGCSD_1261) rpsU 1319548..1319724 (-) 177 WP_000048058.1 30S ribosomal protein S21 -
  FGCSD_RS06630 (FGCSD_1262) - 1319923..1320945 (+) 1023 WP_172595987.1 IS30 family transposase -
  FGCSD_RS06635 (FGCSD_1263) - 1320961..1321803 (-) 843 WP_129555860.1 transporter substrate-binding domain-containing protein -
  FGCSD_RS06640 (FGCSD_1264) - 1321872..1322987 (-) 1116 WP_129555861.1 aminotransferase -
  FGCSD_RS06645 (FGCSD_1265) rexA 1323148..1326777 (-) 3630 WP_281429798.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FGCSD_RS06650 (FGCSD_1266) rexB 1326777..1330001 (-) 3225 WP_129555863.1 ATP-dependent nuclease subunit B Machinery gene
  FGCSD_RS06655 (FGCSD_1267) - 1330176..1331102 (+) 927 WP_022554458.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 1209 a.a.        Molecular weight: 138346.84 Da        Isoelectric Point: 5.3931

>NTDB_id=59033 FGCSD_RS06645 WP_281429798.1 1323148..1326777(-) (rexA) [Streptococcus dysgalactiae strain Kdys0611]
MSFDPFLSPSAIAQLQEKEAQSSQAQKRTPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFT
VKAATELRERIEKKLYAQIAKTSDPLLKAYLTDQLQALSQADIGTMDAFAQKVLIRYGYSIGISPQFRIMQDKAEQDILK
RDVFSKLFEEFMTQDDPSLFKALVKNFSGNRKDASSFREVVYSCYAFSQSTENPKQWLEETFLKAAQTYQGLEDVPEQEI
QLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLAMIEKLYEWARDFPHLYGRQGISRLAKDLTALLPTGNDVT
VAGIKYPVFKSLHQKLIRFRHLETILSYQPESLPLLELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPDIR
QTYQDQYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDYQTYPEQGKLILLKENFR
SQSEVLEASNTVFTHLMDESLGDILYDEQHQLVAGSVGQKIASPEHRAKLLLYNTDHEDQLDIEDADGISPSEVTIVAKE
IIRLHNEQHVPFEDITLLVSSRTRNDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSP
MFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTGTHPDLVHQDLKLKLSRFIETLKSWRRYAKLRSLYDLIWKIFND
RFYFDFVGSQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASPKQAVNLMTIHKSKGLEF
KYVFLLNCDKRFAMTDVHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLPYQLNKQELRLSTLSEQMRLLYVA
MTRAEKQIYLIGKASKEKSQEFTDGKRSGNHLPLALRERLMSFQDWLLAIADTFTAENLHFDVQFIEESELSPEAIGHLQ
SQQLLQPDDLKDNRQSADITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNEFTLP
EFSKQVKVEASQVGSALHRLMQAIPLTKPISLAAIAQVLEEIEAEAVVKAALDLQKVEQFFTETALGKRFQTYSTNLYRE
APFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELIDYKTDRYRHPSDLKTRYQQQLELYAEALSQTYGLPVTKKYLVLMG
GPELTIVTL

Nucleotide


Download         Length: 3630 bp        

>NTDB_id=59033 FGCSD_RS06645 WP_281429798.1 1323148..1326777(-) (rexA) [Streptococcus dysgalactiae strain Kdys0611]
ATATCATTTGACCCTTTTTTAAGTCCAAGTGCCATTGCGCAACTACAAGAAAAAGAAGCTCAAAGTAGTCAAGCGCAAAA
AAGAACCCCAGAACAAATCGAAGCTATTTATACCAGTGGGCAAAATATCTTGGTGTCAGCCTCAGCTGGATCTGGAAAAA
CCTTTGTTATGGTGGAACGGATTCTTGATAAAATCCTAAGGGGTGTTTCAGTAGATAGACTTTTTATTTCAACCTTTACG
GTCAAAGCCGCTACCGAGTTACGTGAACGTATTGAAAAAAAACTGTATGCGCAAATTGCGAAAACCAGTGATCCTTTGCT
AAAAGCTTATCTAACAGACCAATTACAAGCTTTGTCACAGGCTGATATTGGGACGATGGATGCTTTTGCTCAAAAAGTCC
TCATCCGTTACGGGTACAGCATTGGTATTTCCCCTCAATTTCGTATTATGCAAGATAAGGCGGAGCAAGACATTCTAAAG
CGAGATGTTTTTAGCAAATTATTTGAAGAATTTATGACTCAAGATGATCCGTCCTTGTTCAAGGCATTGGTCAAAAATTT
TTCCGGTAATCGTAAAGATGCTTCTTCGTTTAGAGAAGTCGTCTATAGTTGCTATGCCTTTAGCCAATCTACTGAAAATC
CGAAACAGTGGTTAGAAGAAACCTTTCTAAAAGCTGCTCAAACCTATCAAGGGCTTGAAGATGTCCCTGAACAAGAGATT
CAACTCTTACTGTCGACCATGCAAGATACCGCAGATCAGTTAAGAGATGTGACTGACATGGAAGATTATGGTCAGCTGAC
AAAAGCTGGAAAACCAACAGCAAAATACGTCAAACATTTGGCCATGATAGAGAAGCTTTACGAATGGGCGCGTGACTTTC
CTCACCTCTATGGGAGACAGGGGATAAGCCGCCTAGCAAAGGACCTAACAGCCCTTTTGCCGACTGGAAATGATGTGACA
GTGGCTGGGATAAAATACCCTGTCTTCAAGAGTTTACACCAAAAGCTCATCCGATTTAGGCACTTAGAAACCATTTTAAG
CTATCAGCCAGAAAGCCTTCCCTTATTAGAACTTTTGAAGATTGTTGTGCTTGCTTTTTCGAAGGCTTATTTGGATGCCA
AAAAACAAGAAGGTGCTTTTGAATTTTCAGATATTGCCCATTTTGCCATACAGATTTTAGAAGAAAACCCTGATATTAGG
CAGACATATCAAGACCAGTATCATGAAGTCATGGTTGATGAGTATCAAGATAATAATCATATGCAAGAGAGGCTGTTGAC
CTTATTATCAAATGGACATAACCGTTTTATGGTGGGTGATATTAAACAATCCATTTACCGTTTTCGACAGGCAGATCCTC
AGATCTTCAATCAAAAATTCAAGGACTATCAAACCTATCCTGAGCAAGGAAAACTCATTTTATTGAAAGAGAATTTCCGG
AGTCAATCAGAAGTTTTAGAAGCTAGCAATACTGTCTTTACTCATTTAATGGATGAATCCCTAGGAGATATTTTGTATGA
TGAGCAGCATCAGTTGGTGGCAGGTAGCGTTGGTCAAAAAATTGCTTCCCCAGAGCATCGTGCTAAGCTCCTGCTTTATA
ACACCGATCACGAAGATCAACTTGACATAGAAGATGCAGATGGCATTTCGCCTAGTGAAGTGACCATCGTTGCCAAAGAA
ATCATTAGGTTACACAATGAGCAACACGTACCTTTTGAGGATATAACCCTCTTAGTATCATCCAGAACAAGAAATGATGC
CATTTTTCATACCTTTAACCAATACGGTATTCCGCTTGTGGCAGATGGTGGTCAGCAAAATTATCTCAAGTCGGTTGAAG
TAATGGTGATGTTGGATACTTTACGTACTATTAATAACCCAAGAAATGATTATGCCTTGGTCGCCCTATTGCGTTCACCG
ATGTTTGCTTTTGATGAAGATGAACTGACTAGGCTAGCCCTCCAACAAGGAGACGACAAAGAAGCAGATTGCCTCTATGA
TAAATTGGAGAGAGCATGCCTTGGCACAGGAACACACCCTGATTTGGTCCATCAAGACCTAAAACTAAAACTAAGCAGGT
TTATAGAGACCTTAAAAAGCTGGCGCCGTTACGCTAAACTCAGGTCGCTCTATGATCTCATTTGGAAAATTTTCAATGAC
CGTTTCTATTTTGACTTTGTGGGTAGTCAAGCTAAAGCAGAACAGGCACAAGCTAATTTATATGCCTTAGCACTTCGAGC
TAATCAGTTTGAACAATCAGGTTACAAAGGTCTCTCGCGTTTTATTGGCATGATTGACAAGGTGCTGGAAACACAAAATG
ATTTAGCCGATGTTGAGGTAGCTAGCCCTAAACAAGCGGTTAATCTGATGACCATTCACAAGTCCAAGGGATTGGAATTC
AAGTATGTCTTTCTCCTCAACTGTGATAAACGTTTTGCCATGACAGATGTCCATGCGCCATTTATTTTAAGCCGTCAACA
GGGCATCGGTATTAAGTATCTAGCAGATGTCAAAGACGTTCTGGAAGAAAAAACGTTACCTTCAGTTAAAGTGAGTATGG
AAACTCTCCCCTACCAACTCAATAAACAAGAGCTGCGTTTGTCAACTCTATCTGAGCAAATGCGCTTACTCTATGTTGCT
ATGACACGGGCTGAAAAGCAAATCTATCTGATAGGCAAGGCAAGCAAGGAGAAAAGTCAAGAATTCACCGATGGCAAACG
CTCGGGAAATCATTTGCCTTTAGCTCTGCGTGAGCGACTAATGTCCTTCCAAGATTGGCTTTTAGCGATAGCAGATACCT
TCACTGCAGAAAATCTCCATTTTGATGTTCAGTTTATTGAAGAAAGTGAATTGAGTCCAGAAGCTATTGGTCATCTACAG
AGTCAACAACTCTTACAACCAGATGACCTCAAAGACAATCGTCAGTCAGCAGATATTACGAGAGCCATTGACATGCTTAA
TAAGGTATCTCAACTTAATGAACGCTATGAAGCTGCCATTCACCTACCAACAGTCCGAACGCCAAGCCAACTAAAAGCTG
CTTATGAGCCCCTGTTGGATTCAGATGGCGTCGAGGTTATGGAAAAAAGTTACCGGACACTCAACGAATTTACCTTACCT
GAGTTTTCAAAGCAAGTTAAAGTTGAAGCTAGTCAGGTAGGGTCAGCCCTTCATCGACTCATGCAAGCCATCCCTTTAAC
GAAGCCAATCAGTTTGGCAGCAATTGCGCAAGTGTTGGAAGAAATAGAAGCTGAAGCAGTGGTCAAAGCAGCCCTTGATT
TACAAAAGGTAGAACAGTTCTTTACTGAAACGGCTTTAGGAAAAAGGTTTCAAACCTACTCGACTAACCTTTACCGAGAA
GCGCCATTTGCCATCCTCAAGAAAGACCCTCTCAGCCAAGAAGATTATGTCATTCGTGGGATTATAGATGCCTTTCTCTT
GTTTGAAGATCATATCGAATTGATAGACTACAAAACAGATAGGTATCGTCATCCGAGTGACTTAAAAACACGCTATCAAC
AACAACTGGAATTATATGCAGAAGCGCTTAGCCAGACCTATGGACTTCCTGTAACCAAAAAGTACTTAGTGCTGATGGGC
GGACCAGAGTTGACTATTGTGACGCTTTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(473-891)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1039-1188)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.326

71.712

0.368

Multiple sequence alignment