Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BALI_RS13260 | Genome accession | NC_021362 |
| Coordinates | 2712326..2712661 (+) | Length | 111 a.a. |
| NCBI ID | WP_023855185.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis ATCC 9945a | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2707326..2717661
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BALI_RS13235 (BaLi_c27170) | gcvT | 2707756..2708850 (-) | 1095 | WP_020452162.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| BALI_RS13245 (BaLi_c27180) | - | 2709445..2711124 (+) | 1680 | WP_020452163.1 | DEAD/DEAH box helicase | - |
| BALI_RS13250 (BaLi_c27190) | - | 2711131..2711925 (+) | 795 | WP_020452164.1 | YqhG family protein | - |
| BALI_RS13255 (BaLi_c27191) | sinI | 2712116..2712292 (+) | 177 | WP_020452165.1 | anti-repressor SinI | Regulator |
| BALI_RS13260 (BaLi_c27200) | sinR | 2712326..2712661 (+) | 336 | WP_023855185.1 | transcriptional regulator SinR | Regulator |
| BALI_RS13265 (BaLi_c27210) | tasA | 2712766..2713560 (-) | 795 | WP_020452167.1 | biofilm matrix protein TasA | - |
| BALI_RS13270 (BaLi_c27220) | sipW | 2713633..2714217 (-) | 585 | WP_020452168.1 | signal peptidase I SipW | - |
| BALI_RS13275 (BaLi_c27230) | tapA | 2714214..2714942 (-) | 729 | WP_020452169.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BALI_RS13280 (BaLi_c27240) | - | 2715220..2715540 (+) | 321 | WP_020452170.1 | YqzG/YhdC family protein | - |
| BALI_RS13285 (BaLi_c27241) | - | 2715570..2715752 (-) | 183 | WP_020452171.1 | YqzE family protein | - |
| BALI_RS13290 (BaLi_c27250) | comGG | 2715841..2716206 (-) | 366 | WP_020452172.1 | competence type IV pilus minor pilin ComGG | - |
| BALI_RS13295 (BaLi_c27260) | comGF | 2716218..2716706 (-) | 489 | WP_236613657.1 | competence type IV pilus minor pilin ComGF | - |
| BALI_RS13300 (BaLi_c27261) | comGE | 2716615..2716962 (-) | 348 | WP_020452174.1 | competence type IV pilus minor pilin ComGE | - |
| BALI_RS13305 (BaLi_c27270) | comGD | 2716946..2717383 (-) | 438 | WP_020452175.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12962.60 Da Isoelectric Point: 7.0171
>NTDB_id=59007 BALI_RS13260 WP_023855185.1 2712326..2712661(+) (sinR) [Bacillus paralicheniformis ATCC 9945a]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=59007 BALI_RS13260 WP_023855185.1 2712326..2712661(+) (sinR) [Bacillus paralicheniformis ATCC 9945a]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |