Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FGCSD_RS00295 Genome accession   NZ_AP018726
Coordinates   57993..59099 (+) Length   368 a.a.
NCBI ID   WP_129555123.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 52993..64099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS00270 (FGCSD_0055) pgsA 53103..53645 (-) 543 WP_129555120.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FGCSD_RS00275 (FGCSD_0056) - 53659..54690 (-) 1032 WP_129555121.1 helix-turn-helix domain-containing protein -
  FGCSD_RS00280 (FGCSD_0057) - 54740..56023 (-) 1284 WP_129555122.1 pitrilysin family protein -
  FGCSD_RS00285 (FGCSD_0058) - 56025..57269 (-) 1245 WP_015017518.1 pitrilysin family protein -
  FGCSD_RS00290 (FGCSD_0059) yaaA 57578..57991 (+) 414 WP_032464640.1 S4 domain-containing protein YaaA -
  FGCSD_RS00295 (FGCSD_0060) recF 57993..59099 (+) 1107 WP_129555123.1 DNA replication/repair protein RecF Machinery gene
  FGCSD_RS00300 (FGCSD_0061) - 59157..60020 (-) 864 WP_129555124.1 GRP family sugar transporter -
  FGCSD_RS00305 (FGCSD_0062) guaB 60232..61713 (-) 1482 WP_003060436.1 IMP dehydrogenase -
  FGCSD_RS00310 (FGCSD_0063) trpS 61931..62953 (-) 1023 WP_129555125.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41882.79 Da        Isoelectric Point: 7.8294

>NTDB_id=58978 FGCSD_RS00295 WP_129555123.1 57993..59099(+) (recF) [Streptococcus dysgalactiae strain Kdys0611]
MWIKELELKHYRNYNHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGTRVMEHRIDFIDALEKEANTHHQAISNGLENLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSEIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=58978 FGCSD_RS00295 WP_129555123.1 57993..59099(+) (recF) [Streptococcus dysgalactiae strain Kdys0611]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATAACCACCTGCTTGCCTCATTTTCATCAGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGGA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCGGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAAC
CCGTGTCATGGAACATCGTATTGATTTTATCGATGCGCTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAATCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGTGTGGGCCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGAATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAACTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTAGATCACTTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCATGTGACAAAAGGAACCGTTCAAGTTGATTCTGAGATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

63.462

98.913

0.628
  recF Bacillus subtilis subsp. subtilis str. 168

45.187

100

0.459

Multiple sequence alignment