Detailed information NTG0589765

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: LPB404_RS05890
• Genome accession: NZ_CP079821
• Coordinates: 1163408..1164640 (-)
• Length: 410 a.a.
• NCBI ID: WP_219074331.1
• Uniprot ID: -
• Organism: Streptococcus rubneri strain LPB0404
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1158408..1169640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPB404_RS05855 (LPB404_05855)	-	1158880..1159332 (-)	453	WP_023023308.1	hypothetical protein	-
LPB404_RS05860 (LPB404_05860)	-	1159483..1159689 (-)	207	WP_219074327.1	hypothetical protein	-
LPB404_RS05865 (LPB404_05865)	rplL	1159797..1160165 (-)	369	WP_001196965.1	50S ribosomal protein L7/L12	-
LPB404_RS05870 (LPB404_05870)	rplJ	1160242..1160742 (-)	501	WP_219074328.1	50S ribosomal protein L10	-
LPB404_RS05875 (LPB404_05875)	-	1160979..1161776 (-)	798	WP_125336248.1	formate/nitrite transporter family protein	-
LPB404_RS05880 (LPB404_05880)	-	1161955..1162653 (-)	699	WP_219074329.1	glucosaminidase domain-containing protein	-
LPB404_RS05885 (LPB404_05885)	yihA	1162800..1163396 (-)	597	WP_219074330.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
LPB404_RS05890 (LPB404_05890)	clpX	1163408..1164640 (-)	1233	WP_219074331.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
LPB404_RS05895 (LPB404_05895)	-	1164851..1165363 (-)	513	WP_219074332.1	dihydrofolate reductase	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45554.01 Da
• Isoelectric Point: 4.3490

>NTDB_id=589765 LPB404_RS05890 WP_219074331.1 1163408..1164640(-) (clpX) [Streptococcus rubneri strain LPB0404]
MPTNQSNDMMVYCSFCGKNQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLSDLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHETREEDNDVDLQKSNILMVGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDESSSYMQEIIAEDIQKFGIIPELIGRLPVLAALEQLTVEDLVR
ILKEPRNALVKQYQALLSFDDVELEFDDEALEEIASKAIERKTGARGLRSIIEETMLDVMFEVPSQEDVKLVRITKEAVN
GTEKPILETA

Nucleotide

• Length: 1233 bp

>NTDB_id=589765 LPB404_RS05890 WP_219074331.1 1163408..1164640(-) (clpX) [Streptococcus rubneri strain LPB0404]
ATGCCTACAAATCAATCAAACGATATGATGGTTTATTGTTCCTTCTGCGGGAAAAACCAAGACGAAGTACAGAAGATTAT
CGCTGGGAACAATGCCTTTATCTGTAATGAATGTGTTGAGTTAGCTCAAGAAATCATTCGAGAAGAACTTGCTGAGGAAG
TCTTGTCAGACCTTTCAGAAGTTCCAAAACCAATCGAACTCCTCAATATCCTTAACCACTATGTCATCGGTCAGGATCGT
GCTAAACGAGCGCTAGCAGTTGCCGTCTACAATCACTACAAACGGATTAACTTCCACGAAACTCGTGAAGAAGATAACGA
TGTGGATCTACAAAAATCAAACATTTTGATGGTTGGTCCAACAGGTTCAGGAAAAACTTTCTTGGCTCAAACGCTTGCTA
AGAGCTTAAACGTACCATTTGCCATCGCCGATGCAACAGCTTTGACAGAAGCGGGTTACGTCGGTGAAGACGTTGAGAAT
ATCCTTCTCAAGCTATTGCAAGCAGCTGACTTCAATATTGAACGTGCAGAGCGAGGCATCATCTATGTTGATGAAATCGA
TAAGATTGCCAAGAAGAGTGAGAATGTCTCTATCACCCGTGATGTGTCTGGCGAAGGGGTACAGCAAGCCCTCTTGAAGA
TCATCGAGGGAACTGTTGCCAGCGTGCCACCTCAAGGAGGACGCAAGCACCCACAACAAGAGATGATCCAAGTCGACACC
AAAAACATTCTTTTCATCGTAGGTGGAGCCTTTGATGGGATTGAAGAAATTGTCAAGCAACGTCTAGGTGAAAAGATTAT
CGGGTTTGGACAAAACAACAAAGCCATTGATGAATCCAGCTCTTATATGCAAGAAATCATTGCTGAAGATATCCAAAAAT
TCGGTATTATCCCTGAGTTAATTGGTCGTCTTCCTGTTCTTGCTGCTTTGGAGCAACTGACAGTTGAAGATCTGGTCCGT
ATTTTGAAAGAACCAAGAAATGCCTTGGTGAAACAATACCAAGCTCTCTTATCCTTTGATGATGTTGAATTAGAATTTGA
TGACGAAGCGCTTGAAGAAATTGCAAGCAAAGCCATCGAACGCAAGACAGGTGCTCGTGGATTACGCTCTATCATCGAAG
AAACCATGTTGGATGTCATGTTTGAAGTTCCAAGTCAAGAAGACGTCAAACTGGTTCGCATCACCAAAGAAGCCGTTAAC
GGAACTGAAAAACCAATTTTAGAAACTGCTTAG

Domains

Predicted by InterproScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (313-390)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	86.829	100	0.868
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.209	98.049	0.571