Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA2   Type   Machinery gene
Locus tag   LPB402_RS07650 Genome accession   NZ_CP079820
Coordinates   1596594..1597289 (+) Length   231 a.a.
NCBI ID   WP_219089054.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1591594..1602289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS07630 (LPB402_07635) - 1592502..1593281 (+) 780 WP_219089063.1 exodeoxyribonuclease III -
  LPB402_RS07635 (LPB402_07640) - 1593268..1593612 (+) 345 WP_219089061.1 hypothetical protein -
  LPB402_RS07640 (LPB402_07645) - 1593623..1594156 (+) 534 WP_219089058.1 alpha/beta hydrolase -
  LPB402_RS07645 (LPB402_07650) - 1594316..1596424 (+) 2109 WP_219089056.1 TonB-dependent receptor -
  LPB402_RS07650 (LPB402_07655) dsbA2 1596594..1597289 (+) 696 WP_219089054.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LPB402_RS07655 (LPB402_07660) ffh 1597456..1598826 (-) 1371 WP_003684000.1 signal recognition particle protein -
  LPB402_RS07660 (LPB402_07665) - 1599008..1599820 (+) 813 WP_070461213.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25373.87 Da        Isoelectric Point: 5.1502

>NTDB_id=589700 LPB402_RS07650 WP_219089054.1 1596594..1597289(+) (dsbA2) [Neisseria sicca ATCC 29256]
MKLKTLALTSLTLLALAACGKQAETSVPADSAQSSASAPAAPAALTEGVNYTVLSNPIPQQQAGKIEVLEFFGYFCPHCA
HLEPVLSEHIKTFKDDTYMRREHVVWGDEMKPLARLAAAVEMAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
DGKKVLAAFEAPESQERAAQMEELTNKFQISGTPTVIVGGKYQVEFKDWQSGMTTIDQLVDKVREEQKKPQ

Nucleotide


Download         Length: 696 bp        

>NTDB_id=589700 LPB402_RS07650 WP_219089054.1 1596594..1597289(+) (dsbA2) [Neisseria sicca ATCC 29256]
ATGAAACTGAAAACCTTAGCCTTGACCTCATTAACCCTGTTGGCATTGGCCGCTTGCGGCAAACAGGCGGAAACCAGCGT
TCCGGCAGACAGCGCCCAAAGCAGCGCATCTGCTCCGGCAGCCCCTGCCGCATTGACCGAAGGTGTCAATTACACCGTAT
TGTCCAATCCGATTCCGCAACAGCAGGCCGGCAAAATCGAAGTATTGGAATTCTTCGGCTACTTCTGCCCGCATTGCGCC
CATCTTGAGCCGGTTTTGAGCGAGCACATCAAAACGTTTAAAGACGATACCTATATGCGCCGAGAGCATGTCGTGTGGGG
TGATGAAATGAAACCTTTGGCACGTTTGGCGGCCGCAGTGGAAATGGCCGGTGAATCAGATAAAGCCAACAGCCATATTT
TCGATGCGATGGTTAACCAAAAAATCAACTTGGCCGATACCGATACCCTGAAAAAATGGCTGTCCGAGCAAACAGCGTTT
GACGGCAAAAAAGTATTGGCTGCATTTGAAGCGCCCGAAAGCCAAGAGCGTGCGGCTCAAATGGAAGAATTGACCAATAA
ATTCCAAATCAGCGGCACACCGACCGTTATCGTCGGCGGCAAATACCAAGTCGAATTTAAAGACTGGCAGTCCGGCATGA
CCACGATTGACCAGTTGGTGGACAAAGTACGCGAAGAGCAGAAAAAGCCACAATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(65-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA2 Neisseria meningitidis MC58

97.403

100

0.974
  dsbA1 Neisseria meningitidis MC58

71.674

100

0.723