Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LPB402_RS01765 Genome accession   NZ_CP079820
Coordinates   374313..375116 (-) Length   267 a.a.
NCBI ID   WP_004519923.1    Uniprot ID   A0AB36GAR3
Organism   Neisseria sicca ATCC 29256     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369313..380116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS01755 (LPB402_01755) - 371489..372787 (-) 1299 WP_199900365.1 adenylosuccinate synthase -
  LPB402_RS01760 (LPB402_01760) - 372831..373988 (-) 1158 WP_107769007.1 ATP phosphoribosyltransferase regulatory subunit -
  LPB402_RS01765 (LPB402_01765) comL 374313..375116 (-) 804 WP_004519923.1 outer membrane protein assembly factor BamD Machinery gene
  LPB402_RS01770 (LPB402_01770) rluD 375115..376239 (+) 1125 WP_107791854.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LPB402_RS01775 (LPB402_01775) pgeF 376321..377091 (+) 771 WP_219088479.1 peptidoglycan editing factor PgeF -
  LPB402_RS01780 (LPB402_01780) lptE 377212..377691 (+) 480 WP_107791852.1 LPS assembly lipoprotein LptE -
  LPB402_RS01785 (LPB402_01785) holA 377691..378692 (+) 1002 WP_107791851.1 DNA polymerase III subunit delta -
  LPB402_RS01790 (LPB402_01790) - 378839..379258 (+) 420 WP_003746427.1 hypothetical protein -
  LPB402_RS01795 (LPB402_01795) - 379350..379874 (+) 525 WP_070645928.1 RDD family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31038.02 Da        Isoelectric Point: 8.5345

>NTDB_id=589680 LPB402_RS01765 WP_004519923.1 374313..375116(-) (comL) [Neisseria sicca ATCC 29256]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEMSVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=589680 LPB402_RS01765 WP_004519923.1 374313..375116(-) (comL) [Neisseria sicca ATCC 29256]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCACAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATTGCGCGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGATCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGTGACCCGAAAGCTAACCGCGATGCTTACCAGGCGTTTGCCGAGCTGGTGCAACGTTACCCAAACAGT
AAATACGCTGCCGATGCAACCGAACGCATGGCCAAGCTGGTGGACGCTTTGGGCGGTAACGAAATGTCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTTGCAGCGGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTATG
TCGAAGAAGCTTTGGCGATGATGGAATTGGCGTACAAAAAACTGGACAAGCCGCAACTAGCAGCCGATACGCGCCGCGTT
TTGGAAACCAACTTTCCGCAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
CTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.722

99.625

0.884
  comL Neisseria gonorrhoeae MS11

87.97

99.625

0.876