Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   LPB402_RS00160 Genome accession   NZ_CP079820
Coordinates   28211..28756 (-) Length   181 a.a.
NCBI ID   WP_070460864.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 23211..33756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS00135 (LPB402_00135) - 24307..24876 (-) 570 WP_107769433.1 RNA 2'-phosphotransferase -
  LPB402_RS00140 (LPB402_00140) trpE 24920..26395 (-) 1476 WP_070589778.1 anthranilate synthase component I -
  LPB402_RS00145 (LPB402_00145) - 26531..26908 (-) 378 WP_070460870.1 hypothetical protein -
  LPB402_RS00150 (LPB402_00150) - 27045..27665 (+) 621 WP_070460868.1 Smr/MutS family protein -
  LPB402_RS00155 (LPB402_00155) pilL 27718..28206 (-) 489 WP_070460866.1 PilX family type IV pilin Machinery gene
  LPB402_RS00160 (LPB402_00160) pilK 28211..28756 (-) 546 WP_070460864.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LPB402_RS00165 (LPB402_00165) pilJ 28735..29670 (-) 936 WP_070460863.1 PilW family protein Machinery gene
  LPB402_RS00170 (LPB402_00170) pilV 29673..30338 (-) 666 WP_219088643.1 type IV pilus modification protein PilV -
  LPB402_RS00175 (LPB402_00175) pilH 30351..31019 (-) 669 WP_219088641.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LPB402_RS00180 (LPB402_00180) dnaB 31177..32583 (-) 1407 WP_036493702.1 replicative DNA helicase -
  LPB402_RS00185 (LPB402_00185) - 32738..33319 (+) 582 WP_003683473.1 superoxide dismutase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20198.06 Da        Isoelectric Point: 8.7685

>NTDB_id=589672 LPB402_RS00160 WP_070460864.1 28211..28756(-) (pilK) [Neisseria sicca ATCC 29256]
MRRPITLIKPDRQQGYALFIVLMMMVVIALLVVTATQSYNTEQRISTNDADRKLTTTLAEAALREGENQIFDIEGKKTTF
TAKCEKGLCSTPNVKSNGDFTEEGSPTVDAWKRKCDKSLCIDTNGTEYPLDKKSGIANNPRYIIEYLGKTTEGRITYRVT
AKAWGKNANTQVVLQSYVASE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=589672 LPB402_RS00160 WP_070460864.1 28211..28756(-) (pilK) [Neisseria sicca ATCC 29256]
ATGCGCCGACCGATCACTCTAATCAAACCTGACCGGCAGCAGGGCTATGCTTTGTTTATCGTTTTAATGATGATGGTCGT
CATCGCCCTGCTCGTGGTCACAGCTACCCAGTCCTACAATACTGAACAGCGTATCAGCACCAACGATGCCGACCGCAAAC
TGACAACCACTTTGGCCGAAGCGGCATTGCGTGAAGGTGAAAATCAAATTTTTGATATTGAAGGGAAAAAGACTACTTTT
ACCGCAAAATGTGAAAAAGGTTTATGTTCCACACCAAATGTCAAATCCAATGGCGATTTTACTGAAGAAGGTAGCCCAAC
CGTAGATGCTTGGAAGCGTAAATGCGACAAAAGCCTGTGTATTGACACCAATGGTACGGAATATCCTTTAGATAAAAAAA
GCGGCATCGCAAACAATCCACGCTACATCATCGAATATTTAGGCAAAACTACCGAGGGTCGAATTACCTACCGCGTTACT
GCCAAAGCATGGGGTAAGAATGCCAATACCCAAGTCGTCCTTCAGTCTTACGTTGCCAGCGAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(14-64)

Type IV pilus assembly protein PilX C-term (PilX)

(88-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

55.446

100

0.619