Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LPB402_RS00175 Genome accession   NZ_CP079820
Coordinates   30351..31019 (-) Length   222 a.a.
NCBI ID   WP_219088641.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 25351..36019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS00145 (LPB402_00145) - 26531..26908 (-) 378 WP_070460870.1 hypothetical protein -
  LPB402_RS00150 (LPB402_00150) - 27045..27665 (+) 621 WP_070460868.1 Smr/MutS family protein -
  LPB402_RS00155 (LPB402_00155) pilL 27718..28206 (-) 489 WP_070460866.1 PilX family type IV pilin Machinery gene
  LPB402_RS00160 (LPB402_00160) pilK 28211..28756 (-) 546 WP_070460864.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LPB402_RS00165 (LPB402_00165) pilJ 28735..29670 (-) 936 WP_070460863.1 PilW family protein Machinery gene
  LPB402_RS00170 (LPB402_00170) pilV 29673..30338 (-) 666 WP_219088643.1 type IV pilus modification protein PilV -
  LPB402_RS00175 (LPB402_00175) pilH 30351..31019 (-) 669 WP_219088641.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LPB402_RS00180 (LPB402_00180) dnaB 31177..32583 (-) 1407 WP_036493702.1 replicative DNA helicase -
  LPB402_RS00185 (LPB402_00185) - 32738..33319 (+) 582 WP_003683473.1 superoxide dismutase -
  LPB402_RS00190 (LPB402_00190) - 33545..35086 (+) 1542 WP_003747033.1 OFA family MFS transporter -
  LPB402_RS00195 (LPB402_00195) - 35147..35992 (-) 846 WP_070460851.1 DUF817 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24467.70 Da        Isoelectric Point: 8.4439

>NTDB_id=589674 LPB402_RS00175 WP_219088641.1 30351..31019(-) (pilH) [Neisseria sicca ATCC 29256]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPVKIKSDGSPNN
GCDSKYAGNGMLAYADKNGDSNYKNDTVDLSVRSIILNGGTDKVEYSFDYIPIGNDRSALSTSASNEVWWRFLPNGTFGH
STDGKNYQFSDGHIKISLTDKSATDAETKKARATVLLINGNGHVEICAKNDERKMCEYTSKK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=589674 LPB402_RS00175 WP_219088641.1 30351..31019(-) (pilH) [Neisseria sicca ATCC 29256]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATTGTCATTACTATTGCAGCAGTAATGGCCGTCATCGC
ACTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGCAGCATCGCAAGCAGAGCAAATTGCCAATCTGCTGCGCTTCG
CGCGAAATGAGGCCGTCCGTCTCAATCTTCCCGTTTACATCTGCCCGGTCAAAATCAAATCCGATGGCTCGCCCAATAAT
GGTTGCGATTCCAAATATGCCGGTAATGGTATGTTGGCCTACGCCGATAAAAACGGAGATTCCAACTATAAAAACGATAC
AGTCGATTTATCCGTCCGCTCCATTATTCTCAATGGAGGCACCGACAAAGTAGAATACAGCTTCGACTACATCCCTATCG
GCAATGACCGTTCTGCCCTCTCTACTTCGGCTTCAAACGAAGTCTGGTGGAGGTTTCTTCCCAATGGTACATTTGGCCAT
TCGACCGATGGCAAGAATTATCAATTTTCAGACGGCCACATCAAAATCAGCCTGACGGATAAATCCGCTACCGATGCTGA
AACCAAGAAAGCCCGTGCTACCGTACTTTTAATCAATGGCAATGGGCATGTCGAAATCTGTGCTAAAAACGATGAGCGCA
AAATGTGCGAATACACTTCCAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type II transport protein GspH (GspH)

(43-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

54.054

100

0.541