Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LPB400_RS06340 Genome accession   NZ_CP079818
Coordinates   1315169..1315972 (+) Length   267 a.a.
NCBI ID   WP_004519923.1    Uniprot ID   A0AB36GAR3
Organism   Neisseria perflava strain LPB0400     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1310169..1320972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS06310 (LPB400_06320) - 1310411..1310935 (-) 525 WP_070645928.1 RDD family protein -
  LPB400_RS06315 (LPB400_06325) - 1311027..1311446 (-) 420 WP_003746427.1 hypothetical protein -
  LPB400_RS06320 (LPB400_06330) holA 1311593..1312594 (-) 1002 WP_107791851.1 DNA polymerase III subunit delta -
  LPB400_RS06325 (LPB400_06335) lptE 1312594..1313073 (-) 480 WP_107791852.1 LPS assembly lipoprotein LptE -
  LPB400_RS06330 (LPB400_06340) pgeF 1313194..1313964 (-) 771 WP_219088479.1 peptidoglycan editing factor PgeF -
  LPB400_RS06335 (LPB400_06345) rluD 1314046..1315170 (-) 1125 WP_107791854.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LPB400_RS06340 (LPB400_06350) comL 1315169..1315972 (+) 804 WP_004519923.1 outer membrane protein assembly factor BamD Machinery gene
  LPB400_RS06345 (LPB400_06355) - 1316297..1317454 (+) 1158 WP_107769007.1 ATP phosphoribosyltransferase regulatory subunit -
  LPB400_RS06350 (LPB400_06360) - 1317498..1318796 (+) 1299 WP_199900365.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31038.02 Da        Isoelectric Point: 8.5345

>NTDB_id=589643 LPB400_RS06340 WP_004519923.1 1315169..1315972(+) (comL) [Neisseria perflava strain LPB0400]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEMSVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=589643 LPB400_RS06340 WP_004519923.1 1315169..1315972(+) (comL) [Neisseria perflava strain LPB0400]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCACAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATTGCGCGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGATCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGTGACCCGAAAGCTAACCGCGATGCTTACCAGGCGTTTGCCGAGCTGGTGCAACGTTACCCAAACAGT
AAATACGCTGCCGATGCAACCGAACGCATGGCCAAGCTGGTGGACGCTTTGGGCGGTAACGAAATGTCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTTGCAGCGGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTATG
TCGAAGAAGCTTTGGCGATGATGGAATTGGCGTACAAAAAACTGGACAAGCCGCAACTAGCAGCCGATACGCGCCGCGTT
TTGGAAACCAACTTTCCGCAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
CTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.722

99.625

0.884
  comL Neisseria gonorrhoeae MS11

87.97

99.625

0.876