Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA2   Type   Machinery gene
Locus tag   LPB400_RS00455 Genome accession   NZ_CP079818
Coordinates   90617..91312 (-) Length   231 a.a.
NCBI ID   WP_219089054.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 85617..96312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS00445 (LPB400_00445) ccsA 88086..88898 (-) 813 WP_070461213.1 cytochrome c biogenesis protein CcsA -
  LPB400_RS00450 (LPB400_00450) ffh 89080..90450 (+) 1371 WP_003684000.1 signal recognition particle protein -
  LPB400_RS00455 (LPB400_00455) dsbA2 90617..91312 (-) 696 WP_219089054.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LPB400_RS00460 (LPB400_00460) - 91482..93590 (-) 2109 WP_219089056.1 TonB-dependent receptor -
  LPB400_RS00465 (LPB400_00465) - 93750..94283 (-) 534 WP_219089058.1 alpha/beta hydrolase -
  LPB400_RS00470 (LPB400_00470) - 94294..94638 (-) 345 WP_219089061.1 hypothetical protein -
  LPB400_RS00475 (LPB400_00475) - 94625..95404 (-) 780 WP_219089063.1 exodeoxyribonuclease III -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25373.87 Da        Isoelectric Point: 5.1502

>NTDB_id=589623 LPB400_RS00455 WP_219089054.1 90617..91312(-) (dsbA2) [Neisseria perflava strain LPB0400]
MKLKTLALTSLTLLALAACGKQAETSVPADSAQSSASAPAAPAALTEGVNYTVLSNPIPQQQAGKIEVLEFFGYFCPHCA
HLEPVLSEHIKTFKDDTYMRREHVVWGDEMKPLARLAAAVEMAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
DGKKVLAAFEAPESQERAAQMEELTNKFQISGTPTVIVGGKYQVEFKDWQSGMTTIDQLVDKVREEQKKPQ

Nucleotide


Download         Length: 696 bp        

>NTDB_id=589623 LPB400_RS00455 WP_219089054.1 90617..91312(-) (dsbA2) [Neisseria perflava strain LPB0400]
ATGAAACTGAAAACCTTAGCCTTGACCTCATTAACCCTGTTGGCATTGGCCGCTTGCGGCAAACAGGCGGAAACCAGCGT
TCCGGCAGACAGCGCCCAAAGCAGCGCATCTGCTCCGGCAGCCCCTGCCGCATTGACCGAAGGTGTCAATTACACCGTAT
TGTCCAATCCGATTCCGCAACAGCAGGCCGGCAAAATCGAAGTATTGGAATTCTTCGGCTACTTCTGCCCGCATTGCGCC
CATCTTGAGCCGGTTTTGAGCGAGCACATCAAAACGTTTAAAGACGATACCTATATGCGCCGAGAGCATGTCGTGTGGGG
TGATGAAATGAAACCTTTGGCACGTTTGGCGGCCGCAGTGGAAATGGCCGGTGAATCAGATAAAGCCAACAGCCATATTT
TCGATGCGATGGTTAACCAAAAAATCAACTTGGCCGATACCGATACCCTGAAAAAATGGCTGTCCGAGCAAACAGCGTTT
GACGGCAAAAAAGTATTGGCTGCATTTGAAGCGCCCGAAAGCCAAGAGCGTGCGGCTCAAATGGAAGAATTGACCAATAA
ATTCCAAATCAGCGGCACACCGACCGTTATCGTCGGCGGCAAATACCAAGTCGAATTTAAAGACTGGCAGTCCGGCATGA
CCACGATTGACCAGTTGGTGGACAAAGTACGCGAAGAGCAGAAAAAGCCACAATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(65-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA2 Neisseria meningitidis MC58

97.403

100

0.974
  dsbA1 Neisseria meningitidis MC58

71.674

100

0.723