Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EGT72_RS13880 Genome accession   NZ_CP079792
Coordinates   2791429..2792076 (+) Length   215 a.a.
NCBI ID   WP_125281021.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ_082     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2786429..2797076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS13860 (EGT72_013860) - 2786850..2787551 (-) 702 WP_005005861.1 IS1 family transposase -
  EGT72_RS13865 (EGT72_013865) - 2787646..2788347 (-) 702 WP_005005861.1 IS1 family transposase -
  EGT72_RS13870 (EGT72_013870) - 2788554..2789363 (-) 810 WP_125281019.1 NAD-dependent epimerase/dehydratase family protein -
  EGT72_RS13875 (EGT72_013875) recG 2789397..2791442 (+) 2046 WP_125281020.1 ATP-dependent DNA helicase RecG -
  EGT72_RS13880 (EGT72_013880) comF 2791429..2792076 (+) 648 WP_125281021.1 phosphoribosyltransferase family protein Machinery gene
  EGT72_RS13885 (EGT72_013885) - 2792077..2792481 (-) 405 WP_125281022.1 NUDIX domain-containing protein -
  EGT72_RS13890 (EGT72_013890) - 2792478..2793077 (-) 600 WP_125281023.1 TIGR00730 family Rossman fold protein -
  EGT72_RS13895 (EGT72_013895) - 2793230..2794243 (+) 1014 WP_125281024.1 CorA family divalent cation transporter -
  EGT72_RS13900 (EGT72_013900) - 2794325..2794612 (-) 288 WP_004691363.1 STAS domain-containing protein -
  EGT72_RS13905 (EGT72_013905) - 2794624..2795259 (-) 636 WP_004691364.1 ABC transporter substrate-binding protein -
  EGT72_RS13910 (EGT72_013910) - 2795280..2795954 (-) 675 WP_125281025.1 outer membrane lipid asymmetry maintenance protein MlaD -
  EGT72_RS13915 (EGT72_013915) mlaE 2795954..2796733 (-) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24927.17 Da        Isoelectric Point: 9.6202

>NTDB_id=589529 EGT72_RS13880 WP_125281021.1 2791429..2792076(+) (comF) [Acinetobacter johnsonii strain AJ_082]
MPMFSHLLHTAKQLLHRAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGHYQYPLDHLIQQFKYEQQLH
WQPLLSGIIQQIRLPKIQAIVPMPISTQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=589529 EGT72_RS13880 WP_125281021.1 2791429..2792076(+) (comF) [Acinetobacter johnsonii strain AJ_082]
ATGCCTATGTTTAGTCATCTGCTACATACTGCCAAACAGTTGCTACACAGAGCACAGCCCTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTACATTCGGTCTGTTTGGATTGCTGGCAACAACTCCCACTGCATCCACAGACCATTGAAAAACAAGAGC
TGAGTATTCATGTGGCGGGACATTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTATTCAGCAAATTCGCTTACCTAAAATACAAGCAATTGTTCCGATGCCGATTTCGAC
TCAGCGTTTAGCAGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTAAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGCAAAACGCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TAAAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

55.45

98.14

0.544
  comF Acinetobacter baumannii D1279779

55.45

98.14

0.544