Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   EGT72_RS08795 Genome accession   NZ_CP079792
Coordinates   1775453..1775854 (-) Length   133 a.a.
NCBI ID   WP_125281145.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ_082     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1770453..1780854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS08765 (EGT72_008765) tadA 1770709..1771209 (-) 501 WP_005401161.1 tRNA adenosine(34) deaminase TadA -
  EGT72_RS08770 (EGT72_008770) - 1771215..1772336 (-) 1122 WP_125281128.1 enoyl-CoA hydratase/isomerase family protein -
  EGT72_RS08775 (EGT72_008775) ung 1772333..1773046 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  EGT72_RS08780 (EGT72_008780) - 1773088..1773684 (-) 597 WP_125281127.1 6-carboxytetrahydropterin synthase -
  EGT72_RS08785 (EGT72_008785) gspK 1773807..1774757 (-) 951 WP_125281126.1 type II secretion system minor pseudopilin GspK -
  EGT72_RS08790 (EGT72_008790) xcpW 1774836..1775456 (-) 621 WP_004984837.1 type II secretion system minor pseudopilin GspJ Machinery gene
  EGT72_RS08795 (EGT72_008795) xcpV 1775453..1775854 (-) 402 WP_125281145.1 type II secretion system minor pseudopilin GspI Machinery gene
  EGT72_RS08800 (EGT72_008800) - 1775889..1776458 (-) 570 WP_125281125.1 type II secretion system protein -
  EGT72_RS08805 (EGT72_008805) - 1776471..1777085 (-) 615 WP_114836892.1 TetR/AcrR family transcriptional regulator -
  EGT72_RS08810 (EGT72_008810) - 1777131..1777904 (-) 774 WP_125281124.1 TatD family hydrolase -
  EGT72_RS08815 (EGT72_008815) - 1777931..1778272 (-) 342 WP_125281123.1 PilZ domain-containing protein -
  EGT72_RS08820 (EGT72_008820) - 1778287..1779270 (-) 984 WP_125281122.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  EGT72_RS08825 (EGT72_008825) kdsB 1779290..1780051 (-) 762 WP_125281121.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14763.91 Da        Isoelectric Point: 10.3760

>NTDB_id=589519 EGT72_RS08795 WP_125281145.1 1775453..1775854(-) (xcpV) [Acinetobacter johnsonii strain AJ_082]
MKRYFINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISANVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDRSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=589519 EGT72_RS08795 WP_125281145.1 1775453..1775854(-) (xcpV) [Acinetobacter johnsonii strain AJ_082]
ATGAAACGTTATTTCATTAATCCTCGCTCAGGATTTACATTGTTGGAAGTGATGGTGGCGCTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCATGCTATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCTT
GGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATAGAAGCCAACCAT
GA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)

Type II secretion system (T2SS), protein I (T2SSI)

(48-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

72.131

91.729

0.662