NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	EGT72_RS08790	Genome accession	NZ_CP079792
Coordinates	1774836..1775456 (-)	Length	206 a.a.
NCBI ID	WP_004984837.1	Uniprot ID	A0A7H8SFP9
Organism	Acinetobacter johnsonii strain AJ_082
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1769836..1780456

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGT72_RS08760 (EGT72_008760)	-	1770202..1770633 (-)	432	WP_004696860.1	SRPBCC family protein	-
EGT72_RS08765 (EGT72_008765)	tadA	1770709..1771209 (-)	501	WP_005401161.1	tRNA adenosine(34) deaminase TadA	-
EGT72_RS08770 (EGT72_008770)	-	1771215..1772336 (-)	1122	WP_125281128.1	enoyl-CoA hydratase/isomerase family protein	-
EGT72_RS08775 (EGT72_008775)	ung	1772333..1773046 (-)	714	WP_004696856.1	uracil-DNA glycosylase	-
EGT72_RS08780 (EGT72_008780)	-	1773088..1773684 (-)	597	WP_125281127.1	6-carboxytetrahydropterin synthase	-
EGT72_RS08785 (EGT72_008785)	gspK	1773807..1774757 (-)	951	WP_125281126.1	type II secretion system minor pseudopilin GspK	-
EGT72_RS08790 (EGT72_008790)	xcpW	1774836..1775456 (-)	621	WP_004984837.1	type II secretion system minor pseudopilin GspJ	Machinery gene
EGT72_RS08795 (EGT72_008795)	xcpV	1775453..1775854 (-)	402	WP_125281145.1	type II secretion system minor pseudopilin GspI	Machinery gene
EGT72_RS08800 (EGT72_008800)	-	1775889..1776458 (-)	570	WP_125281125.1	type II secretion system protein	-
EGT72_RS08805 (EGT72_008805)	-	1776471..1777085 (-)	615	WP_114836892.1	TetR/AcrR family transcriptional regulator	-
EGT72_RS08810 (EGT72_008810)	-	1777131..1777904 (-)	774	WP_125281124.1	TatD family hydrolase	-
EGT72_RS08815 (EGT72_008815)	-	1777931..1778272 (-)	342	WP_125281123.1	PilZ domain-containing protein	-
EGT72_RS08820 (EGT72_008820)	-	1778287..1779270 (-)	984	WP_125281122.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
EGT72_RS08825 (EGT72_008825)	kdsB	1779290..1780051 (-)	762	WP_125281121.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 206 a.a. Molecular weight: 23563.11 Da Isoelectric Point: 5.3491

                                >NTDB_id=589518 EGT72_RS08790 WP_004984837.1 1774836..1775456(-) (xcpW) [Acinetobacter johnsonii strain AJ_082]

MTKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPITANVAGQVQPAVM

LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEMAQWP

EVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide

Download Length: 621 bp

                                >NTDB_id=589518 EGT72_RS08790 WP_004984837.1 1774836..1775456(-) (xcpW) [Acinetobacter johnsonii strain AJ_082]

ATGACAAAACGCTCAGGCTTTACTTTGGTTGAGTTATTGGTTGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG

GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGTAATACCCAACATGAACAGCGCTTAGGTCAGTTACAAGAAGCAT

ATCAACAAGTGTTACGTGACACGGTGCAAATTGTACCAATTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG

TTGCAAAATGGTCAGTTGACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAAGGCATACCGCCTGAAGAGCGAGT

TGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACCGGTAATGATCAAC

CTGAAACCAGTGTTCTACTTGATTCAGTTGATCAATTTCAAATTATGTTACTCAATCCCAATGAAATGGCACAATGGCCT

GAGGTGGCATTGAGTGAAAATGATGTGACTCAGGCAAAAATACTACCGCGCGGTTTAAAAATAAACCTCACCGTCAATGA

AGTGAGTTATGAATGGGTGTTTAGTTTATTAAACACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7H8SFP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	58.706	97.573	0.573

Detailed information NTG0589518