Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V060002_RS16285 Genome accession   NZ_AP018677
Coordinates   3410653..3411378 (+) Length   241 a.a.
NCBI ID   WP_000877198.1    Uniprot ID   Q9KU21
Organism   Vibrio cholerae strain V060002     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3405653..3416378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V060002_RS16270 (V060002_03078) clpC 3406101..3408674 (-) 2574 WP_001235051.1 ATP-dependent chaperone ClpB Regulator
  V060002_RS16275 (V060002_03079) pgeF 3408799..3409521 (-) 723 WP_000602844.1 peptidoglycan editing factor PgeF -
  V060002_RS16280 (V060002_03080) rluD 3409524..3410498 (-) 975 WP_000941107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V060002_RS16285 (V060002_03081) comL 3410653..3411378 (+) 726 WP_000877198.1 outer membrane protein assembly factor BamD Machinery gene
  V060002_RS16290 (V060002_03082) hpf 3411780..3412106 (+) 327 WP_000700176.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  V060002_RS16295 (V060002_03083) pheA 3412346..3413521 (+) 1176 WP_000130282.1 prephenate dehydratase -
  V060002_RS16300 (V060002_03084) - 3413703..3414743 (+) 1041 WP_000595738.1 spermidine/putrescine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27875.68 Da        Isoelectric Point: 5.1660

>NTDB_id=58950 V060002_RS16285 WP_000877198.1 3410653..3411378(+) (comL) [Vibrio cholerae strain V060002]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=58950 V060002_RS16285 WP_000877198.1 3410653..3411378(+) (comL) [Vibrio cholerae strain V060002]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATACAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KU21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.589

100

0.386
  comL Neisseria gonorrhoeae MS11

37.759

100

0.378

Multiple sequence alignment