Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LP6_RS13805 Genome accession   NC_021350
Coordinates   3048716..3049375 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila str. Thunder Bay     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3043716..3054375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP6_RS13790 (LP6_2674) - 3045056..3045715 (+) 660 WP_010948343.1 hypothetical protein -
  LP6_RS13795 (LP6_2675) - 3045883..3046824 (+) 942 WP_016357032.1 DUF1566 domain-containing protein -
  LP6_RS13800 (LP6_2676) uvrC 3046848..3048704 (-) 1857 WP_010948345.1 excinuclease ABC subunit UvrC -
  LP6_RS13805 (LP6_2677) letA 3048716..3049375 (-) 660 WP_011216518.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  LP6_RS13810 (LP6_2678) phhA 3049500..3050318 (-) 819 WP_010948347.1 phenylalanine 4-monooxygenase -
  LP6_RS13815 (LP6_2679) - 3050757..3051854 (+) 1098 WP_010948348.1 competence/damage-inducible protein A -
  LP6_RS13820 (LP6_2680) cgtA 3051813..3052838 (-) 1026 WP_010948349.1 Obg family GTPase CgtA -
  LP6_RS13825 (LP6_2681) rpmA 3053053..3053331 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  LP6_RS13830 (LP6_2682) rplU 3053344..3053655 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=58942 LP6_RS13805 WP_011216518.1 3048716..3049375(-) (letA) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=58942 LP6_RS13805 WP_011216518.1 3048716..3049375(-) (letA) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTAGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCCTATGTAAAAACCCACTCCCCTGATGTCGTATTATTAG
ATATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACGCGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCT
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAGTCAGG
GGCTGAAGAAATGGCTGCCGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGTCTCAGGATTCCCCTTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995

Multiple sequence alignment