Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KXZ66_RS18670 Genome accession   NZ_CP079759
Coordinates   3599901..3600590 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. LJBS17     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3594901..3605590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS18635 (KXZ66_18630) flgN 3595081..3595563 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KXZ66_RS18640 (KXZ66_18635) flgM 3595579..3595845 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  KXZ66_RS18645 (KXZ66_18640) - 3595926..3596345 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KXZ66_RS18650 (KXZ66_18645) comFC 3596419..3597141 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  KXZ66_RS18655 (KXZ66_18650) comFB 3597105..3597401 (-) 297 WP_014478130.1 late competence protein ComFB -
  KXZ66_RS18660 (KXZ66_18655) comFA 3597461..3598852 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  KXZ66_RS18665 (KXZ66_18660) - 3598958..3599803 (-) 846 WP_003244125.1 DegV family protein -
  KXZ66_RS18670 (KXZ66_18665) degU 3599901..3600590 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KXZ66_RS18675 (KXZ66_18670) degS 3600673..3601830 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KXZ66_RS18680 (KXZ66_18675) - 3602047..3602700 (+) 654 WP_003227979.1 YigZ family protein -
  KXZ66_RS18685 (KXZ66_18680) tagV 3602700..3603875 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  KXZ66_RS18690 (KXZ66_18685) - 3603948..3605024 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=589350 KXZ66_RS18670 WP_003219701.1 3599901..3600590(-) (degU) [Bacillus sp. LJBS17]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=589350 KXZ66_RS18670 WP_003219701.1 3599901..3600590(-) (degU) [Bacillus sp. LJBS17]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1