Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KXZ66_RS18650 Genome accession   NZ_CP079759
Coordinates   3596419..3597141 (-) Length   240 a.a.
NCBI ID   WP_033884179.1    Uniprot ID   -
Organism   Bacillus sp. LJBS17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3591419..3602141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS18615 (KXZ66_18610) fliW 3591558..3591989 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  KXZ66_RS18620 (KXZ66_18615) - 3592010..3592585 (-) 576 WP_041850476.1 DUF6470 family protein -
  KXZ66_RS18625 (KXZ66_18620) flgL 3592632..3593528 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  KXZ66_RS18630 (KXZ66_18625) flgK 3593539..3595062 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  KXZ66_RS18635 (KXZ66_18630) flgN 3595081..3595563 (-) 483 WP_014481048.1 flagellar protein FlgN -
  KXZ66_RS18640 (KXZ66_18635) flgM 3595579..3595845 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  KXZ66_RS18645 (KXZ66_18640) - 3595926..3596345 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KXZ66_RS18650 (KXZ66_18645) comFC 3596419..3597141 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  KXZ66_RS18655 (KXZ66_18650) comFB 3597105..3597401 (-) 297 WP_014478130.1 late competence protein ComFB -
  KXZ66_RS18660 (KXZ66_18655) comFA 3597461..3598852 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  KXZ66_RS18665 (KXZ66_18660) - 3598958..3599803 (-) 846 WP_003244125.1 DegV family protein -
  KXZ66_RS18670 (KXZ66_18665) degU 3599901..3600590 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KXZ66_RS18675 (KXZ66_18670) degS 3600673..3601830 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27544.83 Da        Isoelectric Point: 9.3157

>NTDB_id=589348 KXZ66_RS18650 WP_033884179.1 3596419..3597141(-) (comFC) [Bacillus sp. LJBS17]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=589348 KXZ66_RS18650 WP_033884179.1 3596419..3597141(-) (comFC) [Bacillus sp. LJBS17]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988