Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KXZ66_RS08615 Genome accession   NZ_CP079759
Coordinates   1663577..1664470 (+) Length   297 a.a.
NCBI ID   WP_049139995.1    Uniprot ID   -
Organism   Bacillus sp. LJBS17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1658577..1669470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXZ66_RS08595 (KXZ66_08595) - 1659247..1660977 (+) 1731 WP_021479298.1 hypothetical protein -
  KXZ66_RS08600 (KXZ66_08600) - 1660974..1661255 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  KXZ66_RS08605 (KXZ66_08605) sucC 1661428..1662585 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  KXZ66_RS08610 (KXZ66_08610) sucD 1662614..1663516 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  KXZ66_RS08615 (KXZ66_08615) dprA 1663577..1664470 (+) 894 WP_049139995.1 DNA-processing protein DprA Machinery gene
  KXZ66_RS08620 (KXZ66_08620) topA 1664658..1666733 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  KXZ66_RS08625 (KXZ66_08625) trmFO 1666809..1668116 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KXZ66_RS08630 (KXZ66_08630) xerC 1668184..1669098 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33005.23 Da        Isoelectric Point: 9.7076

>NTDB_id=589313 KXZ66_RS08615 WP_049139995.1 1663577..1664470(+) (dprA) [Bacillus sp. LJBS17]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLQHVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKDWVIVSGLASGIDGMSHAAS
IRAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=589313 KXZ66_RS08615 WP_049139995.1 1663577..1664470(+) (dprA) [Bacillus sp. LJBS17]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCATCTATGTCGCTGACATCACCTGTGCTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCAGCATGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAGGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.316

100

0.983
  dprA Legionella pneumophila strain ERS1305867

38.127

100

0.384
  dprA Lactococcus lactis subsp. cremoris KW2

41.328

91.246

0.377