Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KX797_RS08995 Genome accession   NZ_CP079715
Coordinates   1787585..1788457 (+) Length   290 a.a.
NCBI ID   WP_219098843.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V8     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1782585..1793457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX797_RS08975 (KX797_08975) sucC 1782699..1783865 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  KX797_RS08980 (KX797_08980) sucD 1783887..1784795 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  KX797_RS08985 (KX797_08985) - 1785022..1786140 (+) 1119 WP_001041662.1 LysM peptidoglycan-binding domain-containing protein -
  KX797_RS08990 (KX797_08990) fmhC 1786168..1787412 (+) 1245 WP_000672867.1 FemA/FemB family glycyltransferase FmhC -
  KX797_RS08995 (KX797_08995) dprA 1787585..1788457 (+) 873 WP_219098843.1 DNA-processing protein DprA Machinery gene
  KX797_RS09000 (KX797_09000) topA 1788631..1790706 (+) 2076 WP_001548566.1 type I DNA topoisomerase -
  KX797_RS09005 (KX797_09005) trmFO 1790862..1792169 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33504.95 Da        Isoelectric Point: 9.4338

>NTDB_id=588789 KX797_RS08995 WP_219098843.1 1787585..1788457(+) (dprA) [Staphylococcus aureus strain V8]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYCI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=588789 KX797_RS08995 WP_219098843.1 1787585..1788457(+) (dprA) [Staphylococcus aureus strain V8]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCTGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTGTATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993