Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   SA27298_RS09090 Genome accession   NZ_AP018548
Coordinates   1851502..1854063 (-) Length   853 a.a.
NCBI ID   WP_018543668.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1846502..1859063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS09070 (SA27298_1850) - 1847093..1848028 (-) 936 WP_126438392.1 IS30 family transposase -
  SA27298_RS09075 (SA27298_1851) hexB 1848217..1850163 (-) 1947 WP_003032320.1 DNA mismatch repair endonuclease MutL Machinery gene
  SA27298_RS09080 (SA27298_1852) - 1850418..1850858 (+) 441 WP_003032335.1 LytTR family DNA-binding domain-containing protein -
  SA27298_RS09085 (SA27298_1853) - 1850855..1851313 (+) 459 WP_003032341.1 DUF3021 domain-containing protein -
  SA27298_RS09090 (SA27298_1854) hexA 1851502..1854063 (-) 2562 WP_018543668.1 DNA mismatch repair protein MutS Machinery gene
  SA27298_RS09095 (SA27298_1855) argR 1854321..1854761 (-) 441 WP_003027809.1 arginine repressor -
  SA27298_RS09100 (SA27298_1856) argS 1854865..1856553 (+) 1689 WP_003032324.1 arginine--tRNA ligase -
  SA27298_RS09105 (SA27298_1857) nrdI 1856608..1857063 (-) 456 WP_003032317.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  SA27298_RS09110 (SA27298_1858) - 1857139..1857648 (-) 510 WP_003032313.1 hypothetical protein -

Sequence


Protein


Download         Length: 853 a.a.        Molecular weight: 95877.51 Da        Isoelectric Point: 5.1204

>NTDB_id=58867 SA27298_RS09090 WP_018543668.1 1851502..1854063(-) (hexA) [Streptococcus anginosus strain CCUG 27928]
MTKEKLSPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDATNAAQILEIALTSRNKNSENPIPMAGVPYHSVQQYIDVLI
EAGYKVAIAEQMEDPKKAVGVVKREVVQVITPGTVVDSSKPDSQNNFLVALDKLSGIYGLAYMDVGTGEFQVTSLSDFNI
VCGEIRNLRAREVVLGYELPEMERQVLETQMTLLLSQVETTFDDVQLLGKDLSPLEHQVAGKLLQYVHKTQLRELSHLKQ
VHHYEIKDFLQMDYSTMASLDLTENARTGKKHGSLYWLMDDTKTAMGTRLLRAWIQRPLIDKERIVKRQDVVQVFLDHFF
ERSDLSDTLKGVYDIERLASRVSFGKTNPKDLLQLAATLSHVPQIKGILKGIDSPVLEDLIAKLDEIPELASLIQSAISP
DASNVITEGNIIKTGFDETLDKYRVVMRDGTSWIADIEAKEREASGINNLKIDYNKKDGYYFHVTNSQLEHVPSHFFRKA
TLKNSERFGTEELARIEGEMLEAREKSANLEYEIFMRIREEAGKYIKRLQSLAQTLATVDVLQSFAAVAEKQHFVRPEFI
EQRSIQIDKGRHAVVEKVMGAQTYIPNSISMDENVNVQLITGPNMSGKSTYMRQLAIIVIMAQMGSYVSAESAQLPIFDA
IFTRIGAADDLVSGQSTFMVEMMEANHAISQATENSLILFDELGRGTATYDGMALAQAIIEYIHNRTGAKTLFATHYHEL
TELSTSLTQLENVHVATLEKDGQVTFLHKIEVGPADKSYGIHVAKIAGLPNDLLTRANQILTRLESQANEKSSFGISNTL
PAAAREKNQVAEQMSLFTETTESPILDELRQLDIYNMTPMEVMLAVAEIKKKL

Nucleotide


Download         Length: 2562 bp        

>NTDB_id=58867 SA27298_RS09090 WP_018543668.1 1851502..1854063(-) (hexA) [Streptococcus anginosus strain CCUG 27928]
ATGACAAAAGAAAAACTATCTCCAGGAATGCAACAGTATTTAGATATAAAAAAAGATTATCCAGATGCTTTTTTGCTATT
TCGCATGGGAGATTTTTATGAATTATTCTATGATGATGCGACCAATGCGGCACAGATTTTAGAGATTGCTCTGACTAGTC
GCAATAAAAACTCGGAAAATCCAATCCCAATGGCAGGAGTTCCTTACCATTCAGTGCAGCAATACATTGATGTTTTAATT
GAAGCAGGCTATAAAGTTGCGATTGCAGAGCAAATGGAAGATCCTAAAAAAGCGGTTGGAGTAGTCAAACGCGAAGTAGT
ACAGGTGATTACGCCGGGGACAGTAGTTGATTCTTCAAAACCAGACAGTCAGAATAACTTTTTAGTGGCTTTGGATAAGC
TGTCAGGTATATATGGACTGGCTTATATGGATGTGGGAACGGGTGAATTTCAGGTCACAAGTCTTAGTGACTTTAACATA
GTCTGTGGAGAAATCCGAAACTTGCGAGCGCGTGAAGTGGTCTTAGGGTATGAATTGCCTGAAATGGAGCGCCAAGTATT
GGAGACTCAAATGACTCTCCTTTTATCGCAAGTAGAAACTACATTTGATGATGTTCAGCTACTAGGAAAGGACTTGTCAC
CGCTAGAGCACCAAGTAGCTGGAAAGTTATTACAGTATGTTCATAAAACGCAGCTACGTGAGCTTAGTCATTTGAAACAA
GTTCATCATTATGAAATCAAAGATTTCTTGCAGATGGACTACTCAACTATGGCAAGTCTGGATTTAACAGAGAATGCTCG
GACAGGAAAGAAGCACGGGAGCCTTTATTGGCTGATGGATGATACCAAGACAGCTATGGGAACACGATTGTTGAGAGCGT
GGATTCAACGTCCGTTGATTGATAAAGAGCGAATCGTCAAGCGGCAGGATGTAGTGCAAGTCTTTTTAGATCATTTCTTT
GAGCGCAGTGACTTATCAGACACTCTCAAAGGAGTGTATGATATTGAGCGTTTAGCCAGTCGGGTTTCGTTTGGCAAGAC
CAATCCAAAAGATTTATTACAACTTGCTGCGACATTGAGTCATGTACCACAAATTAAGGGAATCTTAAAAGGAATTGACA
GCCCAGTTTTGGAAGATTTGATTGCCAAATTGGATGAAATTCCTGAACTGGCGTCCTTAATTCAGTCAGCAATTTCGCCG
GATGCTTCAAATGTCATTACAGAGGGTAATATTATTAAAACAGGTTTTGATGAAACCTTGGATAAATATCGAGTGGTTAT
GCGAGATGGAACGAGCTGGATTGCAGATATTGAGGCGAAAGAAAGAGAAGCCAGTGGAATTAACAACCTGAAGATTGATT
ACAATAAAAAAGATGGTTATTATTTTCATGTCACAAATTCCCAGCTTGAACACGTTCCCAGTCATTTTTTCCGCAAGGCA
ACTCTGAAAAATTCAGAGCGTTTTGGTACGGAAGAACTGGCTCGTATTGAAGGGGAGATGTTGGAAGCGCGTGAAAAATC
AGCTAATTTGGAATACGAGATTTTTATGCGCATTCGTGAGGAAGCTGGTAAGTATATCAAACGCCTGCAATCCTTGGCAC
AAACTCTGGCAACGGTTGATGTGCTGCAAAGCTTTGCAGCTGTAGCTGAAAAGCAACACTTTGTGAGACCAGAATTTATT
GAGCAACGCTCTATCCAAATTGATAAAGGGCGGCATGCGGTCGTAGAAAAAGTTATGGGTGCACAAACCTATATTCCTAA
TAGCATTTCAATGGATGAGAATGTTAATGTTCAACTAATTACAGGTCCAAATATGAGTGGGAAGTCAACTTATATGCGGC
AGTTAGCAATTATTGTGATTATGGCTCAAATGGGCTCTTATGTTTCAGCTGAAAGCGCTCAATTGCCGATTTTTGATGCA
ATCTTTACTCGAATTGGTGCAGCTGATGACTTGGTTTCTGGACAATCAACCTTTATGGTTGAAATGATGGAAGCAAACCA
TGCTATTTCTCAAGCAACAGAAAATTCACTTATTCTTTTTGATGAGTTAGGAAGAGGAACAGCGACCTATGATGGCATGG
CGCTTGCTCAAGCTATTATTGAGTATATTCACAATCGGACAGGAGCCAAGACACTTTTTGCGACTCACTATCACGAGTTG
ACAGAACTGTCAACTAGCTTGACACAACTAGAAAATGTCCATGTAGCAACCCTAGAAAAAGATGGTCAAGTAACATTTCT
TCATAAGATTGAGGTTGGACCTGCTGATAAATCTTATGGGATTCATGTAGCAAAAATTGCAGGTTTGCCAAATGATTTGT
TGACAAGAGCGAATCAAATATTGACACGATTAGAAAGCCAAGCAAATGAGAAGTCATCTTTTGGCATCTCTAATACATTG
CCTGCGGCTGCTCGTGAAAAAAATCAAGTGGCTGAGCAGATGTCTTTATTTACAGAAACAACTGAATCACCTATTTTAGA
CGAGTTGCGCCAGTTGGACATTTATAATATGACCCCAATGGAAGTGATGTTGGCTGTGGCAGAGATAAAGAAGAAACTTT
AA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

76.202

100

0.762

  mutS Pseudomonas stutzeri strain ATCC 17587

36.385

100

0.368


Multiple sequence alignment