Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   KEC60_RS02040 Genome accession   NZ_CP079237
Coordinates   422173..422769 (-) Length   198 a.a.
NCBI ID   WP_005297642.1    Uniprot ID   A0A2T3QMJ2
Organism   Photobacterium damselae strain Pdd1608     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 417173..427769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC60_RS02025 (KEC60_02025) - 418265..419278 (+) 1014 WP_284649329.1 Fe(3+) ABC transporter substrate-binding protein -
  KEC60_RS02030 (KEC60_02030) - 419434..421059 (+) 1626 WP_284649330.1 iron ABC transporter permease -
  KEC60_RS02035 (KEC60_02035) - 421062..422099 (+) 1038 WP_284649630.1 ABC transporter ATP-binding protein -
  KEC60_RS02040 (KEC60_02040) opaR 422173..422769 (-) 597 WP_005297642.1 TetR/AcrR family transcriptional regulator Regulator
  KEC60_RS02045 (KEC60_02045) hpt 422990..423526 (+) 537 WP_005297644.1 hypoxanthine phosphoribosyltransferase -
  KEC60_RS02050 (KEC60_02050) can 423601..424272 (-) 672 WP_005297646.1 carbonate dehydratase -
  KEC60_RS02055 (KEC60_02055) - 424371..425294 (+) 924 WP_106142067.1 ABC transporter ATP-binding protein -
  KEC60_RS02060 (KEC60_02060) - 425291..426061 (+) 771 WP_065171758.1 ABC transporter permease -
  KEC60_RS02065 (KEC60_02065) panC 426177..427067 (-) 891 WP_005297652.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22812.08 Da        Isoelectric Point: 7.1177

>NTDB_id=588354 KEC60_RS02040 WP_005297642.1 422173..422769(-) (opaR) [Photobacterium damselae strain Pdd1608]
MDMVIKRTRTRLSPEKRREQLLNSALDVFARRGIGRGGHADIAEMANVSVATVFNYFPTREDLVEQVLIHVESRFNKLLT
HSLNDEMPTAKAKLTNLTDCLIKAVIEQHDWLKVWFEWSTSVRDDIWPLFIKTNKNNLQKLTSVFEQGLTAGEFSRSQSA
SDLAHMFHGTCYVLYLQTHLTLDPEIMQRQADSYLQSL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=588354 KEC60_RS02040 WP_005297642.1 422173..422769(-) (opaR) [Photobacterium damselae strain Pdd1608]
ATGGACATGGTGATTAAGCGTACTCGTACTCGCTTATCTCCAGAAAAACGTCGAGAGCAGCTACTCAATAGCGCACTAGA
TGTTTTTGCTCGTCGTGGTATTGGCCGAGGGGGCCACGCAGATATCGCGGAAATGGCAAATGTCTCTGTTGCGACCGTTT
TCAATTATTTTCCAACTCGCGAAGATTTAGTAGAACAGGTATTAATTCACGTTGAATCTCGTTTCAATAAACTACTGACA
CACTCTCTCAACGATGAAATGCCAACAGCAAAAGCCAAACTGACTAACCTTACCGATTGCTTAATTAAAGCTGTTATAGA
GCAGCACGATTGGCTAAAAGTCTGGTTTGAATGGAGTACATCAGTACGTGATGATATTTGGCCACTGTTTATTAAAACCA
ATAAAAATAACTTACAAAAGTTAACTTCGGTTTTTGAACAGGGATTAACGGCTGGAGAATTTAGCCGCTCTCAATCTGCA
TCAGATTTAGCGCATATGTTTCACGGTACCTGTTATGTGCTGTACTTACAAACGCACCTAACCTTAGACCCTGAAATCAT
GCAGCGACAAGCTGATAGCTATTTACAGAGCCTGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3QMJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

48.485

100

0.485
  hapR Vibrio cholerae C6706

48.241

100

0.485
  hapR Vibrio cholerae strain A1552

48.241

100

0.485