Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SA27298_RS03020 Genome accession   NZ_AP018548
Coordinates   619695..621464 (+) Length   589 a.a.
NCBI ID   WP_003030463.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 614695..626464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS02995 (SA27298_0616) - 614995..615225 (+) 231 WP_018543445.1 DUF1146 family protein -
  SA27298_RS03000 (SA27298_0617) murA 615264..616544 (+) 1281 WP_003030496.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SA27298_RS03005 (SA27298_0618) - 616537..616713 (+) 177 WP_003030460.1 DNA-directed RNA polymerase subunit beta -
  SA27298_RS03010 (SA27298_0619) endA 616814..617659 (+) 846 WP_018543446.1 DNA/RNA non-specific endonuclease Machinery gene
  SA27298_RS03015 (SA27298_0620) - 617949..619685 (+) 1737 WP_003030487.1 ABC transporter ATP-binding protein -
  SA27298_RS03020 (SA27298_0621) rcrQ 619695..621464 (+) 1770 WP_003030463.1 ABC transporter ATP-binding protein Regulator
  SA27298_RS03025 (SA27298_0622) - 621923..622921 (-) 999 WP_003030451.1 YdcF family protein -
  SA27298_RS03040 (SA27298_0624) - 623655..624035 (+) 381 WP_003037448.1 CidA/LrgA family protein -
  SA27298_RS03045 (SA27298_0625) - 624028..624723 (+) 696 WP_003030476.1 LrgB family protein -
  SA27298_RS03050 (SA27298_0626) - 624841..625353 (+) 513 WP_003025236.1 adenine phosphoribosyltransferase -
  SA27298_RS03055 (SA27298_0627) - 625454..626213 (+) 760 Protein_565 homoserine O-succinyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66205.42 Da        Isoelectric Point: 5.5364

>NTDB_id=58800 SA27298_RS03020 WP_003030463.1 619695..621464(+) (rcrQ) [Streptococcus anginosus strain CCUG 27928]
MKQHSFMRLWSYLKVYKLSVILAIFLKVVSIVMSVLEPFVLGLAITELTRNVLDIAKGVEGASINTTYVFWVMALYLLRG
LFYEIGAYYSNYFMTNAVQNTVRDMRNELSSKINQIPVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVVNAVLTITL
VIGMVLYLNFQLALIVIASIPLTYFGATFILKKSQLYFKKQADTLGVMNGFVQENLTGFNVLKLYGREETSSDDFREITQ
NLQEVGFKASFISGLMMPILNAVSDLTYLLVAVVGGLQVISGQLTIGNMQAFVQYVWQVNQPIQNLTQLAGQLQSAKSSL
DRVFQVLDEPDEVTDAKERLEHDLTGQVSFKHVDFQYVENKPLIRDFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYDV
TAGSISVDGHDIRNLSRQEYRKQFGMVLQDAWLYEGTVKENLRFGNLNATDEEIVEAAKAANVDHFIRTLPGGYNMEMNQ
ESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKNLMQGRTSFVIAHRLSTIQEADKILVLKDGQI
IEQGTHESLLADKGFYYDLYTSQFAKKEA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=58800 SA27298_RS03020 WP_003030463.1 619695..621464(+) (rcrQ) [Streptococcus anginosus strain CCUG 27928]
ATGAAGCAACATAGTTTTATGCGCTTGTGGAGTTACTTAAAAGTTTATAAACTCTCAGTAATCCTTGCTATCTTTTTGAA
GGTGGTGAGTATTGTGATGAGCGTGCTAGAGCCTTTTGTACTTGGTCTTGCTATTACAGAATTGACACGAAATGTGCTGG
ACATAGCAAAAGGAGTTGAAGGCGCCAGTATAAACACAACATATGTCTTTTGGGTAATGGCACTTTACCTTTTGCGTGGT
TTGTTCTATGAAATTGGGGCTTATTATTCTAATTATTTTATGACCAATGCAGTGCAAAATACAGTACGTGACATGCGCAA
TGAGTTGAGTTCTAAAATTAATCAAATTCCAGTTTCTTACTTTGATAAGCATCAATTTGGAGATTTGCTAGGGCGCTTTA
CCAGTGATGTAGAGACTGTTTCAAATGCGCTTCAACAGTCATTCCTGCAAGTTGTCAATGCGGTTTTGACCATTACCTTG
GTTATCGGAATGGTCTTGTATCTCAATTTTCAACTGGCTTTGATAGTGATTGCTAGCATTCCTTTGACCTATTTTGGGGC
GACTTTTATTTTGAAGAAATCACAACTGTATTTTAAAAAGCAAGCAGATACGCTAGGTGTCATGAATGGATTTGTTCAAG
AAAATCTAACTGGTTTTAATGTGCTGAAACTCTATGGCCGTGAAGAAACATCTTCAGACGATTTTCGAGAAATCACGCAA
AATCTCCAAGAAGTTGGCTTCAAAGCTAGTTTTATTTCTGGCTTGATGATGCCAATTTTGAACGCCGTTTCAGATTTGAC
CTATCTGCTTGTAGCGGTTGTTGGTGGTCTGCAAGTCATTTCTGGACAATTAACAATTGGGAACATGCAAGCTTTTGTAC
AATATGTTTGGCAAGTAAACCAACCAATCCAAAACCTAACGCAATTGGCTGGGCAATTGCAGAGTGCTAAGTCTTCGCTG
GATCGTGTTTTCCAAGTCTTGGATGAACCAGACGAAGTAACAGATGCGAAAGAGCGGCTGGAACATGATTTGACAGGTCA
GGTCAGCTTTAAGCATGTTGACTTTCAATACGTGGAAAACAAACCGCTCATTCGCGACTTCAATTTGGAGGTAAAGCCGG
GTGAAATGGTAGCAATTGTCGGACCAACCGGTGCTGGAAAGACCACCCTCATCAATCTACTGATGCGTTTTTACGATGTA
ACTGCCGGTTCAATTTCTGTTGACGGCCATGATATTCGCAATTTGTCTCGCCAAGAATACCGCAAACAATTTGGGATGGT
CTTGCAAGATGCTTGGCTTTATGAAGGAACAGTCAAGGAAAACTTGCGCTTTGGAAATCTGAATGCGACAGATGAAGAGA
TTGTGGAAGCTGCCAAAGCGGCTAATGTCGATCATTTCATTCGGACGCTTCCAGGTGGTTATAATATGGAAATGAATCAG
GAATCCAGCAATATTTCGCTAGGACAAAAACAATTGCTGACCATTGCGCGAGCATTATTAGCCGATCCAAAAATCTTGAT
TTTGGATGAAGCAACCTCGTCCGTTGATACACGCCTAGAGCTCTTGATTCAAAAAGCGATGAAGAACCTCATGCAAGGAC
GAACAAGCTTTGTCATTGCTCACCGCTTATCGACGATTCAAGAGGCGGACAAGATTTTGGTTCTCAAAGACGGGCAAATC
ATTGAGCAAGGAACTCACGAATCGCTTTTAGCTGATAAAGGTTTCTATTACGACTTATATACAAGTCAGTTTGCTAAGAA
AGAGGCCTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-302)

ABC transporter (ABC_tran)

(365-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.845

100

0.441

Multiple sequence alignment