Detailed information NTG0058795

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PFLCHA0_RS26230
• Genome accession: NC_021237
• Coordinates: 5878887..5879759 (+)
• Length: 290 a.a.
• NCBI ID: WP_015637068.1
• Uniprot ID: -
• Organism: Pseudomonas protegens CHA0
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5873887..5884759

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PFLCHA0_RS26215 (PFLCHA0_c52580)	-	5876336..5876692 (-)	357	WP_011063519.1	BON domain-containing protein	-
PFLCHA0_RS26220 (PFLCHA0_c52590)	-	5876921..5877337 (-)	417	WP_011063520.1	pilin	-
PFLCHA0_RS26225 (PFLCHA0_c52600)	pilC	5877667..5878884 (+)	1218	WP_015637067.1	type II secretion system F family protein	Machinery gene
PFLCHA0_RS26230 (PFLCHA0_c52610)	pilD	5878887..5879759 (+)	873	WP_015637068.1	prepilin peptidase	Machinery gene
PFLCHA0_RS26235 (PFLCHA0_c52620)	coaE	5879756..5880379 (+)	624	WP_011063523.1	dephospho-CoA kinase	-
PFLCHA0_RS26240 (PFLCHA0_c52630)	yacG	5880376..5880579 (+)	204	WP_015637069.1	DNA gyrase inhibitor YacG	-
PFLCHA0_RS26245 (PFLCHA0_c52640)	-	5880599..5880814 (-)	216	WP_011063525.1	hypothetical protein	-
PFLCHA0_RS26250 (PFLCHA0_c52650)	-	5880878..5881567 (-)	690	WP_015637070.1	energy-coupling factor ABC transporter permease	-
PFLCHA0_RS26255 (PFLCHA0_c52660)	-	5881564..5882031 (-)	468	WP_026019989.1	hypothetical protein	-
PFLCHA0_RS26260 (PFLCHA0_c52670)	-	5882175..5882804 (+)	630	WP_011063528.1	DUF1780 domain-containing protein	-
PFLCHA0_RS26265 (PFLCHA0_c52680)	-	5882994..5883167 (+)	174	WP_015637073.1	DUF3094 family protein	-
PFLCHA0_RS26270 (PFLCHA0_c52690)	-	5883228..5884526 (+)	1299	WP_015637074.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32227.45 Da
• Isoelectric Point: 7.2993

>NTDB_id=58795 PFLCHA0_RS26230 WP_015637068.1 5878887..5879759(+) (pilD) [Pseudomonas protegens CHA0]
MPLTDALTLYPMAFVAAALVLGLIVGSFLNVLVWRLPKMLERDWRAQARDVLGLEPEPVTAPYNLMLPRSQCPHCAQAIR
PWENIPLLSYLWLRGRCAHCNSSISPRYPLTELACGLISGFIAWHFGFGWAAGLMLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFGLLISLEDALWGTVIGYLFLWSVFWLFKLLTGKEGMGHGDFKLLALFGAWGGWQILPLTLLLSSLLG
AILGTILLRLRREKTSTPIPFGPFLAIAGWIALLWGGQITDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=58795 PFLCHA0_RS26230 WP_015637068.1 5878887..5879759(+) (pilD) [Pseudomonas protegens CHA0]
ATGCCCCTGACTGACGCCCTCACTCTCTACCCCATGGCATTCGTGGCTGCGGCCCTGGTATTGGGCCTGATCGTCGGCAG
CTTTCTCAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGAGCCCAGGCCCGCGACGTGCTGGGGC
TGGAGCCGGAACCAGTGACTGCGCCCTATAACCTGATGCTGCCGCGCTCCCAGTGCCCGCACTGTGCGCAGGCAATCCGC
CCCTGGGAAAACATTCCGCTGCTCAGTTACCTGTGGCTGCGTGGCCGCTGCGCCCACTGCAATAGCTCCATCAGCCCGCG
CTACCCGTTGACCGAACTGGCTTGCGGGCTGATCTCGGGTTTTATCGCCTGGCACTTCGGCTTCGGCTGGGCGGCCGGGC
TGATGCTGATCCTCAGTTGGGGGCTGCTGGCAATGAGCCTGATCGACGCCGATCACCAGTTGCTGCCGGATGTGCTGGTG
CTGCCACTGTTGTGGCTGGGGCTGATCGCCAACAGTTTCGGCCTGCTGATCAGCCTGGAGGATGCGCTGTGGGGGACGGT
GATCGGCTACCTGTTCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCCACGGTGATT
TCAAGCTGCTGGCCCTGTTCGGGGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCCTGCTGCTGTCATCCCTGTTGGGG
GCGATTCTCGGCACGATCCTGCTGCGCCTGCGCCGGGAAAAGACCTCGACGCCAATCCCCTTTGGACCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATCTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.093	96.897	0.524
pilD	Vibrio campbellii strain DS40M4	50	97.241	0.486
pilD	Acinetobacter baumannii D1279779	51.282	94.138	0.483
pilD	Acinetobacter nosocomialis M2	51.282	94.138	0.483
pilD	Neisseria gonorrhoeae MS11	47.037	93.103	0.438