Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | KPF52_RS04160 | Genome accession | NZ_CP079109 |
| Coordinates | 804454..804783 (+) | Length | 109 a.a. |
| NCBI ID | WP_183674895.1 | Uniprot ID | A0A9Q2HG05 |
| Organism | Nosocomiicoccus ampullae strain 19-00310 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 799454..809783
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KPF52_RS04130 (KPF52_04130) | - | 799585..801006 (+) | 1422 | WP_219523629.1 | rhomboid family protein | - |
| KPF52_RS04135 (KPF52_04135) | - | 801039..801272 (-) | 234 | WP_183674908.1 | DUF2759 domain-containing protein | - |
| KPF52_RS04140 (KPF52_04140) | - | 801360..801983 (+) | 624 | WP_219523630.1 | MBL fold metallo-hydrolase | - |
| KPF52_RS04145 (KPF52_04145) | - | 802028..802273 (-) | 246 | WP_040928347.1 | DUF2626 family protein | - |
| KPF52_RS04150 (KPF52_04150) | - | 802433..803425 (+) | 993 | WP_183674901.1 | ATPase, T2SS/T4P/T4SS family | - |
| KPF52_RS04155 (KPF52_04155) | comGB | 803397..804443 (+) | 1047 | WP_183674898.1 | competence type IV pilus assembly protein ComGB | - |
| KPF52_RS04160 (KPF52_04160) | comGC | 804454..804783 (+) | 330 | WP_183674895.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| KPF52_RS04165 (KPF52_04165) | - | 804761..805192 (+) | 432 | WP_183674892.1 | type II secretion system protein | - |
| KPF52_RS04170 (KPF52_04170) | - | 805182..805445 (+) | 264 | WP_183674889.1 | hypothetical protein | - |
| KPF52_RS04175 (KPF52_04175) | - | 805408..805830 (+) | 423 | WP_183674886.1 | ComGF family competence protein | - |
| KPF52_RS04180 (KPF52_04180) | - | 805981..806463 (+) | 483 | WP_219523631.1 | shikimate kinase | - |
| KPF52_RS04185 (KPF52_04185) | gcvT | 806710..807783 (+) | 1074 | WP_219523632.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| KPF52_RS04190 (KPF52_04190) | gcvPA | 807813..809156 (+) | 1344 | WP_219523633.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 109 a.a. Molecular weight: 11945.07 Da Isoelectric Point: 9.6083
>NTDB_id=587829 KPF52_RS04160 WP_183674895.1 804454..804783(+) (comGC) [Nosocomiicoccus ampullae strain 19-00310]
MKLNIKKFIQKSKKSEGFTLIEMLLVLLVISVLIILIIPNIAAQSKNVQNTGCEAQVKMVQSQIEAYTLNEGQPPTNISQ
LVPNYLTDKQVSCSNGTGIKIVNGQATKE
MKLNIKKFIQKSKKSEGFTLIEMLLVLLVISVLIILIIPNIAAQSKNVQNTGCEAQVKMVQSQIEAYTLNEGQPPTNISQ
LVPNYLTDKQVSCSNGTGIKIVNGQATKE
Nucleotide
Download Length: 330 bp
>NTDB_id=587829 KPF52_RS04160 WP_183674895.1 804454..804783(+) (comGC) [Nosocomiicoccus ampullae strain 19-00310]
ATGAAACTGAATATTAAAAAGTTTATACAAAAAAGTAAAAAATCAGAAGGTTTTACTTTAATTGAAATGTTACTCGTACT
ACTCGTTATATCTGTACTCATTATATTAATTATCCCAAACATAGCCGCACAATCCAAAAATGTACAAAATACTGGCTGTG
AAGCTCAGGTGAAAATGGTACAAAGCCAAATTGAAGCCTACACATTAAACGAAGGGCAACCACCAACAAATATTAGCCAA
CTCGTACCAAATTACCTCACAGATAAACAAGTGTCTTGTTCTAATGGTACAGGAATTAAGATCGTAAATGGGCAAGCTAC
AAAAGAATGA
ATGAAACTGAATATTAAAAAGTTTATACAAAAAAGTAAAAAATCAGAAGGTTTTACTTTAATTGAAATGTTACTCGTACT
ACTCGTTATATCTGTACTCATTATATTAATTATCCCAAACATAGCCGCACAATCCAAAAATGTACAAAATACTGGCTGTG
AAGCTCAGGTGAAAATGGTACAAAGCCAAATTGAAGCCTACACATTAAACGAAGGGCAACCACCAACAAATATTAGCCAA
CTCGTACCAAATTACCTCACAGATAAACAAGTGTCTTGTTCTAATGGTACAGGAATTAAGATCGTAAATGGGCAAGCTAC
AAAAGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
55.789 |
87.156 |
0.486 |
| comGC | Staphylococcus aureus N315 |
55.789 |
87.156 |
0.486 |
| comGC/cglC | Streptococcus mitis SK321 |
38.835 |
94.495 |
0.367 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
41.237 |
88.991 |
0.367 |