Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SA27298_RS01945 Genome accession   NZ_AP018548
Coordinates   384625..385257 (+) Length   210 a.a.
NCBI ID   WP_003031463.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 379625..390257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS01925 (SA27298_0393) - 380061..380801 (+) 741 WP_003031460.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  SA27298_RS01930 (SA27298_0394) stkP 380798..382672 (+) 1875 WP_018543640.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  SA27298_RS01935 (SA27298_0395) liaF 382933..383631 (+) 699 WP_003025810.1 cell wall-active antibiotics response protein LiaF -
  SA27298_RS01940 (SA27298_0396) - 383628..384623 (+) 996 WP_003031470.1 sensor histidine kinase -
  SA27298_RS01945 (SA27298_0397) vraR 384625..385257 (+) 633 WP_003031463.1 response regulator transcription factor Regulator
  SA27298_RS01950 (SA27298_0398) - 385297..386697 (+) 1401 WP_003031456.1 Cof-type HAD-IIB family hydrolase -
  SA27298_RS01955 (SA27298_0399) - 386699..387073 (+) 375 WP_018543641.1 S1 RNA-binding domain-containing protein -
  SA27298_RS01960 (SA27298_0400) - 387199..387516 (-) 318 WP_003031462.1 DUF960 domain-containing protein -
  SA27298_RS01965 (SA27298_0401) - 387636..388169 (-) 534 WP_003031472.1 DUF402 domain-containing protein -
  SA27298_RS01970 (SA27298_0402) recX 388256..389032 (-) 777 WP_003031458.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23689.21 Da        Isoelectric Point: 4.7341

>NTDB_id=58781 SA27298_RS01945 WP_003031463.1 384625..385257(+) (vraR) [Streptococcus anginosus strain CCUG 27928]
MHILLVDDHEMVRLGLKGYLDLQDDVDVVAEASNGREGVEKALELRSDVIMMDIVMPEMSGIEATLAILKEWPEAKILIL
TSYLDNEKIYPVLDAGAKGYMLKTSSADDILRAVRKVAKGELAIETEVSQKVEYHRNHIELHEDLTARERDILGLLAKGY
ENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLVPQDDI

Nucleotide


Download         Length: 633 bp        

>NTDB_id=58781 SA27298_RS01945 WP_003031463.1 384625..385257(+) (vraR) [Streptococcus anginosus strain CCUG 27928]
ATGCATATTTTATTAGTAGATGACCATGAAATGGTACGACTTGGCTTGAAAGGTTATTTGGATTTACAAGACGATGTGGA
TGTAGTGGCAGAAGCTTCAAATGGTCGCGAAGGAGTTGAAAAAGCTTTGGAGTTGCGCTCGGATGTGATTATGATGGACA
TTGTTATGCCTGAAATGAGTGGGATTGAAGCGACACTTGCTATTTTGAAAGAATGGCCTGAAGCTAAAATTCTCATTTTG
ACTTCTTATTTGGATAATGAAAAAATTTATCCGGTTTTAGACGCAGGTGCTAAAGGATATATGCTGAAAACATCTAGTGC
TGATGATATTTTACGAGCTGTCCGAAAAGTAGCTAAGGGTGAACTTGCCATTGAAACAGAGGTCAGCCAAAAAGTGGAAT
ATCATCGAAATCATATTGAATTGCACGAAGATTTGACTGCGCGTGAGCGAGATATTTTAGGACTACTGGCAAAAGGTTAT
GAAAATCAACGCATAGCAGATGAATTATTTATTTCTTTAAAGACAGTGAAAACACATGTGTCCAATATCTTATCAAAGCT
AGAAGTGAGCGATCGTACACAAGCTGTTGTTTATGCTTTCCAACATCACCTTGTCCCACAAGATGACATTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-199)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

53.883

98.095

0.529
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.41

Multiple sequence alignment