Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SA27298_RS01475 Genome accession   NZ_AP018548
Coordinates   287831..288877 (+) Length   348 a.a.
NCBI ID   WP_004225005.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CCUG 27928     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 282831..293877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS01445 (SA27298_0294) tsaE 284204..284644 (+) 441 WP_004344533.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SA27298_RS01450 (SA27298_0295) - 284637..285158 (+) 522 WP_003033089.1 GNAT family N-acetyltransferase -
  SA27298_RS01455 (SA27298_0296) - 285165..286280 (+) 1116 WP_004224985.1 LCP family protein -
  SA27298_RS01460 (SA27298_0297) - 286327..286614 (-) 288 WP_004224964.1 hypothetical protein -
  SA27298_RS01465 (SA27298_0298) - 286624..287034 (-) 411 WP_004344535.1 HIT family protein -
  SA27298_RS01470 (SA27298_0299) pptA 287103..287834 (+) 732 WP_004344524.1 ABC transporter ATP-binding protein Regulator
  SA27298_RS01475 (SA27298_0300) pptB 287831..288877 (+) 1047 WP_004225005.1 ABC transporter permease Regulator
  SA27298_RS01480 (SA27298_0301) - 288928..289725 (+) 798 WP_003043230.1 phosphotransferase family protein -
  SA27298_RS01485 (SA27298_0302) trmB 289722..290357 (+) 636 WP_003033795.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SA27298_RS01490 (SA27298_0303) - 290974..291663 (+) 690 WP_026248194.1 VIT family protein -
  SA27298_RS01495 (SA27298_0304) rimP 291932..292402 (+) 471 WP_306302048.1 ribosome maturation factor RimP -
  SA27298_RS01500 (SA27298_0305) nusA 292453..293646 (+) 1194 WP_004344529.1 transcription termination factor NusA -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40764.97 Da        Isoelectric Point: 10.3231

>NTDB_id=58774 SA27298_RS01475 WP_004225005.1 287831..288877(+) (pptB) [Streptococcus anginosus strain CCUG 27928]
MRDLFQKRKQVFRNQCLKYSRYVFNDHFVLFLLVFTGFLAVQYSQLLRNLPSNHLPIILALAVLLILLLPLGRIATYMEK
PDSLFLLVKEEELNSYLQEQMRSSYRLWALLQTVALLLLAPLLLALGMPLWGWFILVFLMLLAKWFIFLQKSQKFYQGAG
VNWGYLIAYEERRKQTILRFFALFTNVKGISNSVKRRAYLDGLTNILPKRQSTTWQNMYLRSYLRNGDFLALTIRLLFLS
LLGIGFISQSWIAAIFVALLNYLLLFQLTALYHAFDYQYLTFLFPLEINSKLKGVKQVIALIGYSVLFVETMMALLFFQD
RVALLFMIGITLLLYVIYLPFKLRSLVD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=58774 SA27298_RS01475 WP_004225005.1 287831..288877(+) (pptB) [Streptococcus anginosus strain CCUG 27928]
ATGAGAGATCTGTTTCAAAAGCGCAAACAAGTATTTCGCAATCAATGTTTGAAGTATTCGCGCTATGTTTTTAACGACCA
TTTTGTCCTCTTTTTATTAGTTTTTACTGGCTTTTTAGCTGTTCAATACAGTCAGTTGTTGCGAAATTTACCTTCAAATC
ACCTGCCAATCATTCTTGCTTTAGCAGTTCTTTTGATTTTATTGTTGCCTCTGGGACGAATCGCAACATATATGGAAAAA
CCAGATAGTCTATTTTTATTGGTCAAAGAAGAGGAACTAAACAGCTACTTACAAGAACAAATGCGTTCATCTTATCGATT
ATGGGCCTTGCTTCAAACCGTTGCGTTGTTACTATTAGCACCGCTTCTTCTTGCTTTAGGCATGCCGCTTTGGGGCTGGT
TTATTCTTGTTTTTCTTATGTTGCTAGCAAAATGGTTTATCTTTTTGCAAAAAAGCCAGAAATTTTACCAAGGTGCAGGG
GTGAATTGGGGCTATCTCATTGCTTACGAAGAAAGACGAAAACAGACGATTCTGCGTTTCTTTGCTCTCTTTACCAATGT
TAAGGGAATTTCCAATAGCGTAAAACGCCGAGCATATCTTGATGGTTTGACGAATATTCTACCAAAAAGACAGTCAACTA
CTTGGCAAAATATGTATTTGCGTTCTTATTTGCGCAATGGTGATTTTCTTGCCTTGACTATACGGTTGCTGTTTCTGTCT
CTTTTGGGAATTGGTTTTATCAGTCAATCGTGGATTGCTGCCATATTTGTGGCATTGTTAAATTATCTCCTGCTATTTCA
GTTGACAGCCTTGTACCATGCCTTTGATTACCAATATTTGACGTTCTTATTCCCTTTAGAAATCAACTCAAAGTTAAAAG
GAGTGAAACAAGTGATTGCTCTTATTGGCTACAGCGTGCTTTTTGTGGAAACAATGATGGCTTTGCTGTTTTTCCAAGAT
AGAGTAGCTTTGCTTTTTATGATAGGAATCACATTGCTACTCTATGTCATTTATTTACCATTCAAATTAAGAAGTTTGGT
TGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.839

100

0.468

  pptB Streptococcus salivarius strain HSISS4

46.264

100

0.463


Multiple sequence alignment