NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	KW113_RS11395	Genome accession	NZ_CP079098
Coordinates	2457084..2457953 (-)	Length	289 a.a.
NCBI ID	WP_218801400.1	Uniprot ID	-
Organism	Methylococcus capsulatus strain IO1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2452084..2462953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KW113_RS11360 (KW113_11360)	-	2452232..2452807 (-)	576	WP_010961329.1	RNA pyrophosphohydrolase	-
KW113_RS11365 (KW113_11365)	-	2452995..2453657 (+)	663	WP_010961330.1	HAD family phosphatase	-
KW113_RS11370 (KW113_11370)	-	2453666..2453896 (-)	231	WP_010961331.1	sulfurtransferase TusA family protein	-
KW113_RS11375 (KW113_11375)	cysG	2453945..2455369 (+)	1425	WP_010961332.1	siroheme synthase CysG	-
KW113_RS11380 (KW113_11380)	yacG	2455382..2455597 (-)	216	WP_017366376.1	DNA gyrase inhibitor YacG	-
KW113_RS11385 (KW113_11385)	zapD	2455611..2456324 (-)	714	WP_017366377.1	cell division protein ZapD	-
KW113_RS11390 (KW113_11390)	coaE	2456480..2457076 (-)	597	WP_218800346.1	dephospho-CoA kinase	-
KW113_RS11395 (KW113_11395)	pilD	2457084..2457953 (-)	870	WP_218801400.1	A24 family peptidase	Machinery gene
KW113_RS11400 (KW113_11400)	pilC	2457977..2459191 (-)	1215	WP_010961338.1	type II secretion system F family protein	Machinery gene
KW113_RS11405 (KW113_11405)	pilB	2459196..2460911 (-)	1716	WP_010961339.1	type IV-A pilus assembly ATPase PilB	Machinery gene

Sequence

Protein

Download Length: 289 a.a. Molecular weight: 31141.76 Da Isoelectric Point: 6.9138

                                >NTDB_id=587701 KW113_RS11395 WP_218801400.1 2457084..2457953(-) (pilD) [Methylococcus capsulatus strain IO1]

MMLLPTGPAGVALCGSFGLIIGSFLNVVIHRLPLMMEQAWRRECGELLEPGTGRPAGEAEYNLWRPGSQCPHCQAPVRFW

QNVPVFSYLWLRGRCAACGTAISWRYPLVETLTGVLFAMVAWHFGASWQALAACALTAGLIALAFIDLDHLVLPDDITLP

LLWLGLLLNAQGLFCSLETALYGAVGGYLLLWTVHRGFLLLTGREGMGFGDFKLLAMLGAWMGWPMLPVIILFSSISGAV

IGSVALAVGGKGRDTPIPFGPFLAAGGWIALLWGNALNDAYWRWAAPGG

Nucleotide

Download Length: 870 bp

                                >NTDB_id=587701 KW113_RS11395 WP_218801400.1 2457084..2457953(-) (pilD) [Methylococcus capsulatus strain IO1]

ATGATGTTGTTGCCGACCGGGCCGGCGGGGGTTGCCCTCTGCGGATCGTTCGGACTGATCATCGGGAGTTTTCTCAACGT

GGTCATCCACCGCCTGCCGCTCATGATGGAGCAGGCCTGGCGCAGGGAGTGCGGGGAGTTGCTCGAGCCCGGCACCGGAC

GGCCGGCGGGGGAGGCCGAATACAACCTGTGGAGACCCGGATCGCAGTGTCCGCACTGCCAGGCGCCGGTCCGGTTCTGG

CAGAATGTCCCCGTGTTCAGCTATCTTTGGCTGCGTGGCCGTTGTGCCGCTTGCGGCACGGCGATTTCCTGGCGTTATCC

TTTGGTCGAAACGCTCACGGGGGTGCTGTTCGCAATGGTGGCTTGGCATTTCGGCGCGTCCTGGCAGGCGCTGGCGGCGT

GCGCCCTAACGGCTGGCCTGATCGCCCTGGCTTTCATCGACCTGGATCACTTGGTACTGCCGGACGACATCACGCTTCCC

CTGTTGTGGCTGGGGCTGCTGCTGAACGCCCAAGGCCTCTTCTGCAGTCTGGAGACGGCGCTGTACGGTGCCGTTGGAGG

CTATCTCCTGCTATGGACGGTGCATCGCGGCTTTCTGCTCCTGACCGGCCGGGAGGGCATGGGGTTCGGCGACTTCAAGC

TACTCGCCATGCTCGGTGCCTGGATGGGTTGGCCGATGCTGCCGGTCATCATCCTGTTCTCATCCATCTCGGGTGCGGTG

ATCGGTTCGGTTGCGCTGGCAGTCGGCGGCAAGGGGAGGGACACGCCGATTCCCTTCGGGCCGTTTCTGGCGGCGGGCGG

CTGGATCGCCCTGCTGTGGGGAAATGCGCTCAACGACGCCTATTGGCGCTGGGCCGCTCCTGGAGGCTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-242)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Neisseria gonorrhoeae MS11	50	96.194	0.481
pilD	Vibrio cholerae strain A1552	50.735	94.118	0.478
pilD	Vibrio campbellii strain DS40M4	47.985	94.464	0.453
pilD	Acinetobacter baumannii D1279779	49.057	91.696	0.45
pilD	Acinetobacter nosocomialis M2	48.302	91.696	0.443

Detailed information NTG0587701