Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KWH15_RS04010 | Genome accession | NZ_CP078521 |
| Coordinates | 833380..833823 (+) | Length | 147 a.a. |
| NCBI ID | WP_001099009.1 | Uniprot ID | A0A0C6EXF8 |
| Organism | Staphylococcus aureus strain ATCC 29213 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 823360..868386 | 833380..833823 | within | 0 |
Gene organization within MGE regions
Location: 823360..868386
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KWH15_RS03920 (KWH15_03920) | sufB | 823360..824757 (+) | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
| KWH15_RS03925 (KWH15_03925) | - | 824825..825874 (-) | 1050 | WP_031769022.1 | tyrosine-type recombinase/integrase | - |
| KWH15_RS03930 (KWH15_03930) | - | 825987..826166 (+) | 180 | WP_000337826.1 | hypothetical protein | - |
| KWH15_RS03935 (KWH15_03935) | - | 826146..827078 (-) | 933 | WP_000392186.1 | hypothetical protein | - |
| KWH15_RS03940 (KWH15_03940) | - | 827110..827835 (-) | 726 | WP_000661437.1 | PH domain-containing protein | - |
| KWH15_RS03945 (KWH15_03945) | - | 827863..828537 (-) | 675 | WP_000775187.1 | ImmA/IrrE family metallo-endopeptidase | - |
| KWH15_RS03950 (KWH15_03950) | - | 828554..828886 (-) | 333 | WP_001055143.1 | helix-turn-helix transcriptional regulator | - |
| KWH15_RS03955 (KWH15_03955) | - | 829149..829343 (+) | 195 | WP_000108122.1 | helix-turn-helix transcriptional regulator | - |
| KWH15_RS03960 (KWH15_03960) | - | 829343..830110 (+) | 768 | WP_001002757.1 | phage antirepressor Ant | - |
| KWH15_RS03965 (KWH15_03965) | - | 830111..830335 (+) | 225 | WP_000187184.1 | hypothetical protein | - |
| KWH15_RS03970 (KWH15_03970) | - | 830375..830824 (+) | 450 | WP_001094943.1 | hypothetical protein | - |
| KWH15_RS03975 (KWH15_03975) | - | 830838..831059 (+) | 222 | WP_064129667.1 | hypothetical protein | - |
| KWH15_RS03980 (KWH15_03980) | - | 831052..831195 (+) | 144 | WP_031769019.1 | DUF1270 family protein | - |
| KWH15_RS03985 (KWH15_03985) | - | 831306..831623 (+) | 318 | WP_031769017.1 | hypothetical protein | - |
| KWH15_RS03990 (KWH15_03990) | - | 831616..831918 (+) | 303 | WP_000165363.1 | DUF2482 family protein | - |
| KWH15_RS03995 (KWH15_03995) | - | 831923..832183 (+) | 261 | WP_000291067.1 | DUF1108 family protein | - |
| KWH15_RS04000 (KWH15_04000) | - | 832196..832732 (+) | 537 | WP_001004336.1 | host-nuclease inhibitor Gam family protein | - |
| KWH15_RS04005 (KWH15_04005) | - | 832733..833383 (+) | 651 | WP_000840496.1 | ERF family protein | - |
| KWH15_RS04010 (KWH15_04010) | ssbA | 833380..833823 (+) | 444 | WP_001099009.1 | single-stranded DNA-binding protein | Machinery gene |
| KWH15_RS04015 (KWH15_04015) | - | 833835..834509 (+) | 675 | WP_031769015.1 | putative HNHc nuclease | - |
| KWH15_RS04020 (KWH15_04020) | - | 834615..835472 (-) | 858 | WP_000371250.1 | DUF4393 domain-containing protein | - |
| KWH15_RS04025 (KWH15_04025) | - | 835537..836307 (+) | 771 | WP_031769013.1 | conserved phage C-terminal domain-containing protein | - |
| KWH15_RS04030 (KWH15_04030) | - | 836317..837090 (+) | 774 | WP_031769012.1 | ATP-binding protein | - |
| KWH15_RS04035 (KWH15_04035) | - | 837084..837245 (+) | 162 | WP_000237153.1 | hypothetical protein | - |
| KWH15_RS04040 (KWH15_04040) | - | 837258..837479 (+) | 222 | WP_001123673.1 | DUF3269 family protein | - |
| KWH15_RS04045 (KWH15_04045) | - | 837490..837894 (+) | 405 | WP_031769010.1 | DUF1064 domain-containing protein | - |
| KWH15_RS04050 (KWH15_04050) | - | 837899..838084 (+) | 186 | WP_001187242.1 | DUF3113 family protein | - |
| KWH15_RS04055 (KWH15_04055) | - | 838085..838702 (+) | 618 | WP_031769009.1 | SA1788 family PVL leukocidin-associated protein | - |
| KWH15_RS04060 (KWH15_04060) | - | 838702..838959 (+) | 258 | WP_031769008.1 | DUF3310 domain-containing protein | - |
| KWH15_RS04065 (KWH15_04065) | - | 838962..839162 (+) | 201 | WP_031769006.1 | hypothetical protein | - |
| KWH15_RS04070 (KWH15_04070) | - | 839171..839419 (+) | 249 | WP_078066199.1 | SAV1978 family virulence-associated passenger protein | - |
| KWH15_RS04075 (KWH15_04075) | - | 839433..839681 (+) | 249 | WP_031769005.1 | DUF1024 family protein | - |
| KWH15_RS04080 (KWH15_04080) | - | 839674..840201 (+) | 528 | WP_000185638.1 | dUTP pyrophosphatase | - |
| KWH15_RS04085 (KWH15_04085) | - | 840238..840474 (+) | 237 | WP_000195831.1 | DUF1381 domain-containing protein | - |
| KWH15_RS04090 (KWH15_04090) | - | 840499..840735 (+) | 237 | WP_031769004.1 | hypothetical protein | - |
| KWH15_RS04095 (KWH15_04095) | - | 840728..840901 (+) | 174 | WP_000595257.1 | transcriptional activator RinB | - |
| KWH15_RS04100 (KWH15_04100) | - | 840902..841264 (+) | 363 | WP_000383791.1 | hypothetical protein | - |
| KWH15_RS04105 (KWH15_04105) | - | 841265..841411 (+) | 147 | WP_000989961.1 | hypothetical protein | - |
| KWH15_RS04110 (KWH15_04110) | - | 841426..841845 (+) | 420 | WP_000058634.1 | transcriptional regulator | - |
| KWH15_RS04115 (KWH15_04115) | - | 842032..842472 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| KWH15_RS04120 (KWH15_04120) | - | 842459..843736 (+) | 1278 | WP_031769002.1 | PBSX family phage terminase large subunit | - |
| KWH15_RS04125 (KWH15_04125) | - | 843747..845282 (+) | 1536 | WP_031769000.1 | phage portal protein | - |
| KWH15_RS04130 (KWH15_04130) | - | 845289..846284 (+) | 996 | WP_001556698.1 | minor capsid protein | - |
| KWH15_RS04135 (KWH15_04135) | - | 846357..846527 (+) | 171 | WP_000072207.1 | hypothetical protein | - |
| KWH15_RS04140 (KWH15_04140) | - | 846662..847276 (+) | 615 | WP_000354309.1 | DUF4355 domain-containing protein | - |
| KWH15_RS04145 (KWH15_04145) | - | 847290..848264 (+) | 975 | WP_031768999.1 | phage major capsid protein | - |
| KWH15_RS04150 (KWH15_04150) | - | 848286..848573 (+) | 288 | WP_001114085.1 | hypothetical protein | - |
| KWH15_RS04155 (KWH15_04155) | - | 848582..848914 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| KWH15_RS04160 (KWH15_04160) | - | 848911..849213 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| KWH15_RS04165 (KWH15_04165) | - | 849213..849560 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| KWH15_RS04170 (KWH15_04170) | - | 849572..849955 (+) | 384 | WP_000188649.1 | hypothetical protein | - |
| KWH15_RS04175 (KWH15_04175) | - | 849974..850555 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| KWH15_RS04180 (KWH15_04180) | - | 850617..850982 (+) | 366 | WP_001100163.1 | tail assembly chaperone | - |
| KWH15_RS04185 (KWH15_04185) | - | 851012..851356 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| KWH15_RS04190 (KWH15_04190) | - | 851373..854840 (+) | 3468 | WP_031768997.1 | membrane protein | - |
| KWH15_RS04195 (KWH15_04195) | - | 854853..855800 (+) | 948 | WP_000350683.1 | phage tail family protein | - |
| KWH15_RS04200 (KWH15_04200) | - | 855809..857710 (+) | 1902 | WP_031768995.1 | SGNH/GDSL hydrolase family protein | - |
| KWH15_RS04205 (KWH15_04205) | - | 857725..859635 (+) | 1911 | WP_031768993.1 | hypothetical protein | - |
| KWH15_RS04210 (KWH15_04210) | - | 859635..861458 (+) | 1824 | WP_031768991.1 | phage baseplate upper protein | - |
| KWH15_RS04215 (KWH15_04215) | - | 861458..861835 (+) | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| KWH15_RS04220 (KWH15_04220) | - | 861839..862012 (+) | 174 | WP_000782200.1 | XkdX family protein | - |
| KWH15_RS04225 (KWH15_04225) | - | 862052..862351 (+) | 300 | WP_000466777.1 | DUF2951 domain-containing protein | - |
| KWH15_RS04230 (KWH15_04230) | - | 862488..864386 (+) | 1899 | WP_001836236.1 | glucosaminidase domain-containing protein | - |
| KWH15_RS04235 (KWH15_04235) | - | 864399..865637 (+) | 1239 | WP_016170467.1 | BppU family phage baseplate upper protein | - |
| KWH15_RS04240 (KWH15_04240) | - | 865643..866038 (+) | 396 | WP_016170466.1 | hypothetical protein | - |
| KWH15_RS04245 (KWH15_04245) | - | 866094..866369 (+) | 276 | WP_000351119.1 | phage holin | - |
| KWH15_RS04250 (KWH15_04250) | - | 866356..867768 (+) | 1413 | WP_031768990.1 | N-acetylmuramoyl-L-alanine amidase | - |
| KWH15_RS04255 (KWH15_04255) | - | 867829..868386 (-) | 558 | WP_031768989.1 | DUF4888 domain-containing protein | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 16321.89 Da Isoelectric Point: 5.8347
>NTDB_id=587572 KWH15_RS04010 WP_001099009.1 833380..833823(+) (ssbA) [Staphylococcus aureus strain ATCC 29213]
MNTVNLIGNLVADPELKGQNNNVVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF
MNTVNLIGNLVADPELKGQNNNVVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF
Nucleotide
Download Length: 444 bp
>NTDB_id=587572 KWH15_RS04010 WP_001099009.1 833380..833823(+) (ssbA) [Staphylococcus aureus strain ATCC 29213]
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACGTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACGTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
41.279 |
100 |
0.483 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
38.235 |
100 |
0.442 |