Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   K751_RS07520 Genome accession   NC_021218
Coordinates   1561892..1562467 (-) Length   191 a.a.
NCBI ID   WP_015642255.1    Uniprot ID   -
Organism   Helicobacter pylori UM066     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1556892..1567467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS07510 (K751_00420) - 1558648..1559823 (-) 1176 WP_015642257.1 restriction endonuclease subunit S -
  K751_RS07515 (K751_00415) - 1559820..1561859 (-) 2040 WP_015642256.1 N-6 DNA methylase -
  K751_RS07520 (K751_00410) comFC 1561892..1562467 (-) 576 WP_015642255.1 ComF family protein Machinery gene
  K751_RS07525 (K751_09700) tmk 1562455..1563030 (-) 576 WP_015642254.1 dTMP kinase -
  K751_RS07530 (K751_00400) coaD 1563032..1563505 (-) 474 WP_015642253.1 pantetheine-phosphate adenylyltransferase -
  K751_RS07535 (K751_00395) - 1563505..1564068 (-) 564 WP_000780123.1 UbiX family flavin prenyltransferase -
  K751_RS07540 (K751_00385) flgA 1564078..1564734 (-) 657 WP_015642252.1 flagellar basal body P-ring formation chaperone FlgA -
  K751_RS07545 (K751_00380) uvrD 1564731..1566776 (-) 2046 WP_015642251.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21384.99 Da        Isoelectric Point: 8.7510

>NTDB_id=58754 K751_RS07520 WP_015642255.1 1561892..1562467(-) (comFC) [Helicobacter pylori UM066]
MRCLTCLRLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYTLIGSRILPLLSQKAGAEFVKILQEKG
LTIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNTISYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCNADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=58754 K751_RS07520 WP_015642255.1 1561892..1562467(-) (comFC) [Helicobacter pylori UM066]
ATGCGTTGTTTAACTTGTTTGAGGCTTTCTTTTAAGCCCCTTTGCTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACA
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCTGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCACTTTGCAATCGCTCTTTG
CAACGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

93.194

100

0.932
  ctsW Campylobacter jejuni subsp. jejuni 81-176

39.175

100

0.398

Multiple sequence alignment