Detailed information NTG0587535

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: KVH38_RS04050
• Genome accession: NZ_CP078509
• Coordinates: 862669..864894 (+)
• Length: 741 a.a.
• NCBI ID: WP_125872043.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain S116
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 857669..869894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KVH38_RS04020 (KVH38_04020)	-	857819..858127 (-)	309	WP_011913753.1	hypothetical protein	-
KVH38_RS04025 (KVH38_04025)	-	858131..858766 (-)	636	WP_014597110.1	PilZ domain-containing protein	-
KVH38_RS04030 (KVH38_04030)	-	858799..860046 (+)	1248	WP_041771782.1	lipoprotein-releasing ABC transporter permease subunit	-
KVH38_RS04035 (KVH38_04035)	lolD	860054..860752 (+)	699	WP_013983263.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
KVH38_RS04040 (KVH38_04040)	-	860752..861996 (+)	1245	WP_045632531.1	lipoprotein-releasing ABC transporter permease subunit	-
KVH38_RS04045 (KVH38_04045)	-	862009..862524 (-)	516	WP_011913748.1	DUF2062 domain-containing protein	-
KVH38_RS04050 (KVH38_04050)	comA	862669..864894 (+)	2226	WP_125872043.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KVH38_RS04055 (KVH38_04055)	-	864966..865598 (+)	633	WP_013983260.1	MotA/TolQ/ExbB proton channel family protein	-
KVH38_RS04060 (KVH38_04060)	-	865595..866023 (+)	429	WP_013983259.1	ExbD/TolR family protein	-
KVH38_RS04065 (KVH38_04065)	lpxK	866023..867027 (+)	1005	WP_125865384.1	tetraacyldisaccharide 4'-kinase	-
KVH38_RS04070 (KVH38_04070)	-	867073..867258 (+)	186	WP_011913743.1	Trm112 family protein	-
KVH38_RS04075 (KVH38_04075)	kdsB	867255..868019 (+)	765	WP_125865383.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KVH38_RS04080 (KVH38_04080)	-	868021..868488 (+)	468	WP_125865382.1	low molecular weight protein-tyrosine-phosphatase	-
KVH38_RS04085 (KVH38_04085)	murB	868485..869504 (+)	1020	WP_125865381.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80978.53 Da
• Isoelectric Point: 9.9068

>NTDB_id=587535 KVH38_RS04050 WP_125872043.1 862669..864894(+) (comA) [Stutzerimonas stutzeri strain S116]
MRTWMLALAAGLVLPRFLPALPAQWFCAALAAVGLPLLLRHSWVAPGLFLLGLSWACYQSQSAIDDRLPASMDGRTFWIE
GRVVGLPSRIGNVVRFELDDIQSRHAGLPSKVRLSWYDGPLLQAGERWRLAARLKRPHGMVNPHAFDYEAWLLARRIGAT
GTIKAGERLTASAASDGWRDQLRARLMAVPASDRQGAIAALVVGDDSGLSRGDWQVLQDTGTVHLMVISGQHIGMLAGLL
YGLVALLARLGAWPRRLPWLPWACGLALSGALAYGWLAGFDVPVRRACLMVTVVLVWRLRFRHLGVWLPLLLALDGVLLI
DPLVTLQPGFWLSFGAVAVLALAFSGRLGSWRWWMALTRAQWAATLGLLPLLLALGLPVSASGPLANLLAVPWVSLTVPF
ALLGTLLLPLAGVGEALLSVVGYSLALLFDVLAAIANWQPAWIAVGLPVWALALIGLGVLLLLLPAGIPLRSLGLLLLLP
LVFPPRVEVPDGRAQVWVLDVGQGLAVLVRTREYALLYDAGPKQGDFDTGERVVVPSLRTLGVTRLDLLLLSHADNDHSG
GADAVQRLLRVDRVVSGEPSRLAPDLGAEHCESGRSWQWNNVRFSLWQWQMARDSNQQSCVLQIEANGERILLTGDIDQA
AERAWLASEQRTPSHWLLLPHHGSRSSSSEPFLRGVASHAALISRSLHNAFGHPHPSVIERLETLDIQAYDTALHGAIRI
ELGSFSPPRLQRSQRRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=587535 KVH38_RS04050 WP_125872043.1 862669..864894(+) (comA) [Stutzerimonas stutzeri strain S116]
ATGCGCACATGGATGCTTGCGCTCGCCGCGGGTCTGGTCCTGCCACGCTTCCTTCCTGCCTTGCCCGCGCAGTGGTTCTG
TGCGGCGCTGGCGGCTGTCGGACTGCCGCTCCTGCTGCGTCACAGCTGGGTGGCGCCGGGCTTGTTTCTACTGGGCTTGA
GCTGGGCCTGCTACCAGAGCCAGAGCGCCATCGACGACCGCTTACCGGCGTCCATGGACGGTCGTACGTTCTGGATCGAG
GGACGGGTAGTGGGGTTGCCCAGCCGCATCGGCAATGTGGTGCGCTTCGAGCTCGACGACATCCAATCGCGCCATGCCGG
GTTGCCATCGAAGGTGCGGCTGTCCTGGTATGACGGTCCGCTGCTGCAAGCGGGCGAGCGTTGGCGCCTGGCGGCGCGAC
TGAAGCGACCGCATGGCATGGTCAATCCCCACGCCTTCGATTACGAAGCCTGGTTGCTGGCGCGACGCATCGGCGCCACG
GGCACGATAAAGGCGGGCGAGCGCCTGACGGCGTCGGCGGCAAGCGACGGATGGCGCGATCAGCTTCGGGCGCGGCTCAT
GGCCGTTCCGGCATCCGATCGGCAGGGCGCCATCGCGGCACTGGTGGTGGGTGACGATTCCGGTTTGAGCCGCGGCGACT
GGCAGGTGTTGCAGGACACCGGCACCGTCCACCTGATGGTCATCTCCGGACAGCACATCGGCATGCTGGCGGGGCTGCTC
TATGGTCTGGTCGCATTGCTGGCTCGCCTGGGTGCGTGGCCGCGGCGGTTGCCCTGGTTGCCCTGGGCGTGCGGGCTGGC
GTTAAGCGGTGCGCTGGCCTATGGCTGGCTGGCCGGTTTCGATGTGCCGGTGCGTCGTGCCTGCCTGATGGTGACGGTGG
TGCTTGTCTGGCGATTGCGCTTTCGCCATCTGGGTGTCTGGTTGCCGCTGCTGCTGGCGCTCGATGGCGTCCTGCTGATC
GATCCTCTGGTGACATTGCAGCCGGGGTTCTGGCTGTCGTTTGGAGCGGTGGCGGTTCTGGCATTGGCGTTCTCGGGTCG
GCTCGGCTCATGGCGCTGGTGGATGGCCCTGACCCGGGCGCAGTGGGCGGCCACCCTTGGTCTGCTTCCGCTGTTGCTGG
CCCTCGGATTGCCGGTAAGTGCGAGCGGGCCGCTGGCCAATCTGCTTGCCGTACCCTGGGTGAGTCTGACCGTGCCCTTT
GCGTTGCTCGGTACGCTCCTGCTGCCCCTGGCCGGGGTTGGCGAAGCGCTGCTGTCGGTGGTCGGCTATTCGCTGGCATT
GCTGTTCGACGTCCTGGCGGCGATAGCCAATTGGCAACCCGCCTGGATTGCGGTCGGCCTGCCCGTCTGGGCGCTGGCGT
TAATCGGGCTGGGCGTCCTGTTGCTGTTGCTGCCAGCGGGTATTCCGCTGCGTTCGCTGGGTTTGCTGCTGCTATTACCG
CTGGTATTCCCGCCTCGTGTGGAGGTGCCAGACGGCCGGGCGCAGGTCTGGGTATTGGATGTCGGGCAGGGCCTGGCGGT
GCTTGTACGCACTCGCGAGTATGCACTGCTCTACGATGCCGGGCCGAAGCAGGGCGACTTCGATACGGGCGAGCGGGTGG
TCGTCCCTTCGCTCCGGACCCTTGGCGTGACTCGGTTGGACCTGCTGTTGCTGAGTCATGCCGATAATGATCATTCGGGC
GGTGCGGACGCGGTTCAGCGGTTGCTGAGGGTTGATCGGGTGGTCAGTGGCGAGCCGTCGCGCCTTGCGCCTGATCTGGG
CGCCGAACATTGCGAAAGCGGTCGCAGCTGGCAGTGGAACAATGTGCGCTTCAGTCTGTGGCAATGGCAGATGGCACGCG
ACAGCAATCAGCAGTCCTGCGTGCTGCAAATCGAGGCCAATGGTGAGCGGATCCTGCTCACCGGCGACATCGACCAGGCC
GCGGAGCGGGCATGGCTGGCAAGCGAACAGCGCACCCCATCGCACTGGCTGTTGCTGCCCCACCATGGCAGCCGCAGCTC
GTCGTCAGAACCGTTTCTGCGCGGTGTCGCCTCCCATGCCGCGCTGATCTCGCGCAGCCTGCACAATGCCTTCGGCCACC
CACACCCAAGCGTGATCGAGCGGCTCGAGACCCTCGATATCCAGGCCTACGACACCGCCTTGCATGGCGCAATCCGCATA
GAGCTGGGAAGCTTTTCGCCTCCTCGGCTACAACGTTCGCAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-168)

• Competence protein (Competence) (201-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-674)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.947	96.356	0.645
comA	Ralstonia pseudosolanacearum GMI1000	36.761	100	0.386