Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KVY09_RS03975 Genome accession   NZ_CP078159
Coordinates   818484..818882 (+) Length   132 a.a.
NCBI ID   WP_070440365.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain NY5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 813484..823882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVY09_RS03945 (KVY09_03945) atpD 813760..815172 (+) 1413 WP_070440360.1 F0F1 ATP synthase subunit beta -
  KVY09_RS03950 (KVY09_03950) - 815193..815594 (+) 402 WP_070440361.1 F0F1 ATP synthase subunit epsilon -
  KVY09_RS03955 (KVY09_03955) - 815722..815955 (+) 234 WP_070440363.1 DUF1146 family protein -
  KVY09_RS03960 (KVY09_03960) murA 816060..817325 (+) 1266 WP_016931214.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KVY09_RS03965 (KVY09_03965) fabZ 817365..817802 (+) 438 WP_016931213.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KVY09_RS03970 (KVY09_03970) - 817852..818295 (-) 444 WP_011275248.1 YwpF-like family protein -
  KVY09_RS03975 (KVY09_03975) ssb 818484..818882 (+) 399 WP_070440365.1 single-stranded DNA-binding protein Machinery gene
  KVY09_RS03980 (KVY09_03980) - 819220..819927 (+) 708 WP_070440367.1 transglycosylase family protein -
  KVY09_RS03985 (KVY09_03985) tenA 820215..820904 (+) 690 WP_070440369.1 thiaminase II -
  KVY09_RS03990 (KVY09_03990) thiD 820897..821718 (+) 822 WP_070440371.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KVY09_RS03995 (KVY09_03995) thiM 821711..822502 (+) 792 WP_070440373.1 hydroxyethylthiazole kinase -
  KVY09_RS04000 (KVY09_04000) thiE 822504..823142 (+) 639 WP_053025530.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15155.12 Da        Isoelectric Point: 4.9859

>NTDB_id=587406 KVY09_RS03975 WP_070440365.1 818484..818882(+) (ssb) [Staphylococcus haemolyticus strain NY5]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDVK

Nucleotide


Download         Length: 399 bp        

>NTDB_id=587406 KVY09_RS03975 WP_070440365.1 818484..818882(+) (ssb) [Staphylococcus haemolyticus strain NY5]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAGATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAAGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGCCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
CGATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

99.242

0.75
  ssb Staphylococcus aureus MW2

74.809

99.242

0.742