Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M1M81_RS00145 Genome accession   NZ_CP096591
Coordinates   29674..30270 (+) Length   198 a.a.
NCBI ID   WP_007615147.1    Uniprot ID   A0A150F6G9
Organism   Bacillus amyloliquefaciens strain A15.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24674..35270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1M81_RS00120 (M1M81_00120) - 26021..26572 (-) 552 WP_014416712.1 isochorismatase family cysteine hydrolase -
  M1M81_RS00125 (M1M81_00125) tadA 26655..27137 (+) 483 WP_007615141.1 tRNA adenosine(34) deaminase TadA -
  M1M81_RS00135 (M1M81_00135) dnaX 27620..29311 (+) 1692 WP_032872149.1 DNA polymerase III subunit gamma/tau -
  M1M81_RS00140 (M1M81_00140) - 29336..29659 (+) 324 WP_029326155.1 YbaB/EbfC family nucleoid-associated protein -
  M1M81_RS00145 (M1M81_00145) recR 29674..30270 (+) 597 WP_007615147.1 recombination protein RecR Machinery gene
  M1M81_RS00150 (M1M81_00150) - 30289..30513 (+) 225 WP_007408755.1 YaaL family protein -
  M1M81_RS00155 (M1M81_00155) - 30574..30837 (+) 264 WP_003150686.1 pro-sigmaK processing inhibitor BofA family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21988.56 Da        Isoelectric Point: 5.3504

>NTDB_id=587225 M1M81_RS00145 WP_007615147.1 29674..30270(+) (recR) [Bacillus amyloliquefaciens strain A15.1]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSICGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=587225 M1M81_RS00145 WP_007615147.1 29674..30270(+) (recR) [Bacillus amyloliquefaciens strain A15.1]
ATGCAGTATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGACGTGGTATTAGATTTCGCGAAAGCATTAGTAAATGCGAAGCGCAACC
TGACATATTGTTCGATTTGCGGACATATTACAGATCAGGACCCTTGTTATATATGTGAGGACACAAGAAGGGATAAGTCT
GTTATTTGTGTCGTGCAGGACCCTAAGGATGTTATCGCAATGGAGAAAATGAAGGAATATAACGGCCAGTATCATGTTCT
TCACGGCGCGATTTCACCAATGGACGGCATCGGCCCGGAGGATATTAAGATTCCGGAGCTGCTGAAACGTCTTCAGGATG
ATCAAGTGACAGAAGTCATTCTCGCAACCAACCCTAATATTGAAGGGGAAGCAACAGCGATGTATATATCAAGGCTGTTA
AAGCCCTCAGGCATCAAGCTCTCCCGTATTGCCCACGGTCTGCCCGTCGGCGGTGATTTGGAATATGCTGATGAGGTCAC
TCTTTCAAAAGCTCTTGAAGGAAGACGTGAATTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150F6G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

99.495

100

0.995
  recR Streptococcus pneumoniae R6

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.551

98.99

0.52