Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY98_RS04910 Genome accession   NZ_CP078119
Coordinates   938809..939192 (-) Length   127 a.a.
NCBI ID   WP_284445949.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 933809..944192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY98_RS04890 (KWY98_04890) - 933996..934937 (-) 942 WP_003686969.1 ABC transporter ATP-binding protein -
  KWY98_RS04895 (KWY98_04895) - 934946..935821 (-) 876 WP_003686971.1 NUDIX hydrolase family protein -
  KWY98_RS04905 (KWY98_04905) thiC 936419..938320 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  KWY98_RS04910 (KWY98_04910) pilE 938809..939192 (-) 384 WP_284445949.1 pilin Machinery gene
  KWY98_RS04915 (KWY98_04915) - 939544..939942 (-) 399 Protein_932 pilin -
  KWY98_RS11555 - 940104..940457 (-) 354 Protein_933 pilin -
  KWY98_RS11560 - 940497..940883 (-) 387 Protein_934 pilin -
  KWY98_RS04925 (KWY98_04925) - 941271..941717 (-) 447 Protein_935 pilin -
  KWY98_RS04930 (KWY98_04930) - 942209..942562 (-) 354 Protein_936 pilin -
  KWY98_RS11925 (KWY98_04935) - 942615..943175 (-) 561 WP_305729116.1 pilin -
  KWY98_RS04940 (KWY98_04940) - 943227..943535 (+) 309 Protein_938 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13705.54 Da        Isoelectric Point: 9.9779

>NTDB_id=587120 KWY98_RS04910 WP_284445949.1 938809..939192(-) (pilE) [Neisseria gonorrhoeae strain 1291]
MPAGILKHRPKKSAVAGYCPNHGKWPENNTSAGVASPPSDIKGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWARR
ENGSVKWFCGQPVTRTDDDTVADAKDGKEIDTKHLPSTCRDKASDAK

Nucleotide


Download         Length: 384 bp        

>NTDB_id=587120 KWY98_RS04910 WP_284445949.1 938809..939192(-) (pilE) [Neisseria gonorrhoeae strain 1291]
TTGCCCGCCGGAATATTAAAACACCGCCCAAAAAAATCAGCCGTTGCCGGGTATTGCCCGAATCACGGCAAATGGCCGGA
AAACAACACTTCTGCCGGCGTGGCATCCCCCCCCTCCGACATCAAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACG
GCGTCGTTACCGCCACAATGCTTTCAAGCGGCGTAAACAATGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGT
GAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGACGACGACACCGTTGCCGACGCCAAAGACGG
CAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGGCATCTGATGCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

89.516

97.638

0.874
  pilE Neisseria gonorrhoeae strain FA1090

68.293

96.85

0.661