Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KWY99_RS08865 Genome accession   NZ_CP078118
Coordinates   1674334..1674729 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1670284..1681525 1674334..1674729 within 0


Gene organization within MGE regions


Location: 1670284..1681525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY99_RS12170 - 1670284..1670880 (-) 597 WP_012503916.1 TIGR02391 family protein -
  KWY99_RS12175 - 1671070..1671927 (-) 858 WP_012503917.1 ATP-binding protein -
  KWY99_RS08845 (KWY99_08845) - 1671941..1672312 (-) 372 WP_012503918.1 DNA cytosine methyltransferase -
  KWY99_RS08850 (KWY99_08850) - 1672309..1672899 (-) 591 WP_080229150.1 DNA cytosine methyltransferase -
  KWY99_RS08855 (KWY99_08855) - 1673274..1673420 (+) 147 WP_003691757.1 hypothetical protein -
  KWY99_RS08860 (KWY99_08860) comP 1673797..1674246 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  KWY99_RS08865 (KWY99_08865) comE 1674334..1674729 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  KWY99_RS12180 - 1674831..1674949 (-) 119 Protein_1732 competence protein ComE -
  KWY99_RS08895 (KWY99_08895) - 1680574..1681227 (-) 654 Protein_1733 TIGR01621 family pseudouridine synthase -
  KWY99_RS08900 (KWY99_08900) - 1681181..1681525 (-) 345 WP_003691787.1 HAD hydrolase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=587094 KWY99_RS08865 WP_003703428.1 1674334..1674729(-) (comE) [Neisseria gonorrhoeae strain MS11]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=587094 KWY99_RS08865 WP_003703428.1 1674334..1674729(-) (comE) [Neisseria gonorrhoeae strain MS11]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1